Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18065

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
3,410,355	-		LU632_RS18060	0.13	-1.8
3,410,355	-		LU632_RS18060	0.13	+0.1
3,410,468	-		LU632_RS18060	0.59	+1.5
3,410,468	-		LU632_RS18060	0.59	-1.5
3,410,508	-		LU632_RS18060	0.76	-0.7
3,410,508	-		LU632_RS18060	0.76	-0.1
3,410,508	-		LU632_RS18060	0.76	+0.3
3,410,541	+		LU632_RS18060	0.89	+1.2
3,410,541	+		LU632_RS18060	0.89	-0.5
3,410,781	+				-0.4
3,410,806	+				+0.3
3,410,807	-				-0.2
3,410,999	+				+0.5
3,410,999	+				-3.5
3,410,999	+				-0.7
3,410,999	+				+0.8
3,410,999	+				-0.8
3,410,999	+				-1.9
3,411,042	-				-0.6
3,411,248	+	ushA	LU632_RS18065	0.19	-0.1
3,411,248	+	ushA	LU632_RS18065	0.19	+0.4
3,411,249	-	ushA	LU632_RS18065	0.19	+0.5
3,411,281	+	ushA	LU632_RS18065	0.21	-0.1
3,411,281	+	ushA	LU632_RS18065	0.21	-0.5
3,411,282	-	ushA	LU632_RS18065	0.21	+0.9
3,411,282	-	ushA	LU632_RS18065	0.21	-0.4
3,411,326	+	ushA	LU632_RS18065	0.24	-0.9
3,411,330	+	ushA	LU632_RS18065	0.24	-0.2
3,411,331	-	ushA	LU632_RS18065	0.24	+0.4
3,411,495	+	ushA	LU632_RS18065	0.34	-2.4
3,411,495	+	ushA	LU632_RS18065	0.34	+2.0
3,411,495	+	ushA	LU632_RS18065	0.34	+1.4
3,411,495	+	ushA	LU632_RS18065	0.34	-0.1
3,411,496	-	ushA	LU632_RS18065	0.34	+0.8
3,411,496	-	ushA	LU632_RS18065	0.34	-1.0
3,411,496	-	ushA	LU632_RS18065	0.34	+0.6
3,411,499	+	ushA	LU632_RS18065	0.34	-0.4
3,411,499	+	ushA	LU632_RS18065	0.34	+1.8
3,411,500	-	ushA	LU632_RS18065	0.34	+0.4
3,411,500	-	ushA	LU632_RS18065	0.34	+1.5
3,411,500	-	ushA	LU632_RS18065	0.34	-1.0
3,411,582	-	ushA	LU632_RS18065	0.39	-0.3
3,411,615	+	ushA	LU632_RS18065	0.41	-0.7
3,411,650	+	ushA	LU632_RS18065	0.43	+0.2
3,411,651	-	ushA	LU632_RS18065	0.43	+0.7
3,411,651	-	ushA	LU632_RS18065	0.43	+1.4
3,411,703	-	ushA	LU632_RS18065	0.47	-1.4
3,411,704	+	ushA	LU632_RS18065	0.47	-0.3
3,411,704	+	ushA	LU632_RS18065	0.47	+2.0
3,411,705	-	ushA	LU632_RS18065	0.47	+1.7
3,411,705	-	ushA	LU632_RS18065	0.47	+0.5
3,411,779	+	ushA	LU632_RS18065	0.51	-0.2
3,411,780	-	ushA	LU632_RS18065	0.51	+0.3
3,411,792	+	ushA	LU632_RS18065	0.52	-0.8
3,411,810	+	ushA	LU632_RS18065	0.53	+0.7
3,411,811	-	ushA	LU632_RS18065	0.53	-0.5
3,411,811	-	ushA	LU632_RS18065	0.53	-0.8
3,411,846	+	ushA	LU632_RS18065	0.55	+0.1
3,411,846	+	ushA	LU632_RS18065	0.55	-2.0
3,411,847	+	ushA	LU632_RS18065	0.55	+1.1
3,411,847	-	ushA	LU632_RS18065	0.55	+0.6
3,411,923	+	ushA	LU632_RS18065	0.60	-0.9
3,411,949	-	ushA	LU632_RS18065	0.62	+1.2
3,411,973	-	ushA	LU632_RS18065	0.63	-3.1
3,412,161	+	ushA	LU632_RS18065	0.74	-0.6
3,412,161	+	ushA	LU632_RS18065	0.74	-0.1
3,412,161	+	ushA	LU632_RS18065	0.74	-0.3
3,412,162	-	ushA	LU632_RS18065	0.74	-2.9
3,412,332	+	ushA	LU632_RS18065	0.85	-0.2
3,412,332	+	ushA	LU632_RS18065	0.85	-0.9
3,412,333	-	ushA	LU632_RS18065	0.85	-1.1
3,412,350	+	ushA	LU632_RS18065	0.86	-0.2
3,412,351	-	ushA	LU632_RS18065	0.86	+1.3
3,412,489	-				-2.8
3,412,497	+				+0.5
3,412,497	+				-1.3
3,412,498	-				+0.9
3,412,498	-				+0.5
3,412,498	-				+0.7
3,412,503	+				+1.4
3,412,631	+				+0.4
3,412,758	-				+0.5
3,412,772	+				-2.3
3,412,881	-		LU632_RS18070	0.18	-1.1
3,412,890	+		LU632_RS18070	0.19	-0.5
3,412,898	+		LU632_RS18070	0.20	-1.0
3,412,898	+		LU632_RS18070	0.20	+3.6
3,412,899	-		LU632_RS18070	0.20	+0.4
3,412,940	+		LU632_RS18070	0.23	+0.9
3,412,941	-		LU632_RS18070	0.23	+1.5
3,412,984	-		LU632_RS18070	0.27	-0.4
3,413,155	+		LU632_RS18070	0.41	+0.5
3,413,155	+		LU632_RS18070	0.41	-1.5
3,413,155	+		LU632_RS18070	0.41	-0.9
3,413,156	-		LU632_RS18070	0.41	+2.7
3,413,156	-		LU632_RS18070	0.41	-2.3
3,413,156	-		LU632_RS18070	0.41	+1.1
3,413,156	-		LU632_RS18070	0.41	+3.1
3,413,362	-		LU632_RS18070	0.59	+0.9
3,413,389	-		LU632_RS18070	0.61	+0.3
3,413,389	-		LU632_RS18070	0.61	-0.7
3,413,391	+		LU632_RS18070	0.61	+0.7
3,413,400	+		LU632_RS18070	0.62	-2.8
3,413,401	-		LU632_RS18070	0.62	+1.3
3,413,412	-		LU632_RS18070	0.63	-0.5
3,413,444	-		LU632_RS18070	0.65	-0.7
3,413,486	+		LU632_RS18070	0.69	-0.6
3,413,486	+		LU632_RS18070	0.69	-0.6
3,413,486	+		LU632_RS18070	0.69	+1.5
3,413,486	+		LU632_RS18070	0.69	-2.7
3,413,567	-		LU632_RS18070	0.76	-2.1