Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15140

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
2,868,590	+				+0.5
2,868,591	-				-1.7
2,868,591	-				+3.4
2,868,591	-				+0.1
2,868,645	+				-0.6
2,868,873	-		LU632_RS15135	0.33	-2.7
2,868,905	-		LU632_RS15135	0.38	+1.6
2,869,140	-		LU632_RS15135	0.68	-1.2
2,869,223	+		LU632_RS15135	0.79	+1.5
2,869,224	-		LU632_RS15135	0.79	+1.4
2,869,224	-		LU632_RS15135	0.79	+0.2
2,869,264	+		LU632_RS15135	0.84	-1.0
2,869,343	-				+0.1
2,869,396	-				+1.3
2,869,441	-		LU632_RS15140	0.11	+0.8
2,869,462	+		LU632_RS15140	0.18	-0.4
2,869,462	+		LU632_RS15140	0.18	-0.5
2,869,462	+		LU632_RS15140	0.18	-1.7
2,869,463	-		LU632_RS15140	0.18	+2.2
2,869,474	-		LU632_RS15140	0.22	+0.3
2,869,515	+		LU632_RS15140	0.36	-2.1
2,869,545	-		LU632_RS15140	0.47	+0.3
2,869,545	-		LU632_RS15140	0.47	+0.2
2,869,545	-		LU632_RS15140	0.47	+1.4
2,869,598	+		LU632_RS15140	0.66	+0.7
2,869,599	-		LU632_RS15140	0.66	+2.2
2,869,621	+		LU632_RS15140	0.74	+0.3
2,869,622	-		LU632_RS15140	0.74	+0.9
2,869,645	+		LU632_RS15140	0.82	-0.5
2,869,702	+				+0.7
2,869,706	+				-0.4
2,869,706	+				+0.8
2,869,706	+				+0.6
2,869,706	+				-0.9
2,869,707	-				-0.7
2,869,708	+				-0.2
2,869,709	-				-0.5
2,869,802	-		LU632_RS15145	0.10	-2.7
2,869,835	-		LU632_RS15145	0.17	-0.2
2,869,835	-		LU632_RS15145	0.17	-0.5
2,869,894	+		LU632_RS15145	0.29	-0.5
2,869,894	+		LU632_RS15145	0.29	-0.1
2,869,895	-		LU632_RS15145	0.30	+1.2
2,869,895	-		LU632_RS15145	0.30	-0.6
2,869,895	-		LU632_RS15145	0.30	+0.6
2,869,975	+		LU632_RS15145	0.46	-0.0
2,869,976	-		LU632_RS15145	0.46	+0.8
2,869,976	-		LU632_RS15145	0.46	+0.1
2,869,976	-		LU632_RS15145	0.46	-0.1
2,869,976	-		LU632_RS15145	0.46	-1.6
2,870,015	-		LU632_RS15145	0.54	-1.2
2,870,079	-		LU632_RS15145	0.67	+0.4
2,870,079	-		LU632_RS15145	0.67	+0.2
2,870,200	+				-1.2
2,870,201	-				-0.8
2,870,201	-				+0.9
2,870,234	+				-0.5
2,870,235	-				+1.0
2,870,264	-				-0.1
2,870,318	+				+2.2
2,870,370	+				+1.7
2,870,370	+				+0.6
2,870,371	-				-0.2
2,870,371	-				-1.7
2,870,426	+				+0.3
2,870,426	+				+0.5
2,870,426	+				+0.9
2,870,427	-				-1.0
2,870,468	+		LU632_RS15150	0.12	-0.3
2,870,493	+		LU632_RS15150	0.13	+0.0
2,870,494	-		LU632_RS15150	0.13	-1.3
2,870,518	-		LU632_RS15150	0.14	-1.7
2,870,525	+		LU632_RS15150	0.14	+1.3
2,870,624	+		LU632_RS15150	0.19	-1.0
2,870,625	-		LU632_RS15150	0.19	+2.7
2,870,634	-		LU632_RS15150	0.20	+1.1