Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12960

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
2,469,042	+	xthA	LU632_RS12950	0.23	-2.6
2,469,181	-	xthA	LU632_RS12950	0.40	+0.1
2,469,259	-	xthA	LU632_RS12950	0.50	+0.4
2,469,292	+	xthA	LU632_RS12950	0.54	+0.1
2,469,293	-	xthA	LU632_RS12950	0.54	-1.5
2,469,296	+	xthA	LU632_RS12950	0.55	+1.1
2,469,296	+	xthA	LU632_RS12950	0.55	-0.1
2,469,314	+	xthA	LU632_RS12950	0.57	+2.4
2,469,315	-	xthA	LU632_RS12950	0.57	-0.2
2,469,315	-	xthA	LU632_RS12950	0.57	-0.6
2,469,446	+	xthA	LU632_RS12950	0.73	+0.2
2,469,446	+	xthA	LU632_RS12950	0.73	+0.4
2,469,447	-	xthA	LU632_RS12950	0.73	-0.2
2,469,506	+	xthA	LU632_RS12950	0.81	+2.2
2,469,506	+	xthA	LU632_RS12950	0.81	+1.0
2,469,597	+				+1.2
2,469,598	-				+1.0
2,469,682	-				-1.6
2,469,699	-				+0.8
2,469,738	-		LU632_RS12955	0.12	+1.2
2,469,763	+		LU632_RS12955	0.19	+1.2
2,469,769	+		LU632_RS12955	0.21	+0.4
2,469,769	+		LU632_RS12955	0.21	+2.0
2,469,770	-		LU632_RS12955	0.21	-1.3
2,469,801	+		LU632_RS12955	0.30	+1.5
2,469,802	-		LU632_RS12955	0.31	-1.1
2,469,804	-		LU632_RS12955	0.31	+0.6
2,469,819	-		LU632_RS12955	0.36	-0.4
2,469,888	+		LU632_RS12955	0.56	+0.6
2,469,889	-		LU632_RS12955	0.56	+0.0
2,469,889	-		LU632_RS12955	0.56	+0.5
2,469,889	-		LU632_RS12955	0.56	-1.0
2,469,889	-		LU632_RS12955	0.56	-1.3
2,469,892	+		LU632_RS12955	0.57	-3.1
2,469,892	+		LU632_RS12955	0.57	-0.2
2,469,892	+		LU632_RS12955	0.57	-0.3
2,469,892	+		LU632_RS12955	0.57	-0.1
2,469,892	+		LU632_RS12955	0.57	-0.8
2,469,893	-		LU632_RS12955	0.57	+0.5
2,469,893	-		LU632_RS12955	0.57	-0.4
2,469,917	+		LU632_RS12955	0.64	-0.8
2,469,939	+		LU632_RS12955	0.71	+0.8
2,469,966	-		LU632_RS12955	0.79	+0.6
2,470,024	-				-3.5
2,470,029	+				+1.2
2,470,039	+				-0.9
2,470,040	-				-0.2
2,470,064	+				-1.7
2,470,065	-				+0.4
2,470,065	-				-1.6
2,470,175	+				-1.8
2,470,187	-				-1.9
2,470,190	+				+0.2
2,470,190	+				-0.2
2,470,307	+		LU632_RS12960	0.14	+2.2
2,470,307	+		LU632_RS12960	0.14	+0.2
2,470,308	-		LU632_RS12960	0.14	+0.7
2,470,310	-		LU632_RS12960	0.14	-0.3
2,470,322	+		LU632_RS12960	0.15	+0.4
2,470,443	-		LU632_RS12960	0.21	+0.5
2,470,458	+		LU632_RS12960	0.22	-0.8
2,470,459	-		LU632_RS12960	0.22	-1.5
2,470,461	+		LU632_RS12960	0.22	+1.2
2,470,720	+		LU632_RS12960	0.36	+1.2
2,470,721	-		LU632_RS12960	0.36	+0.8
2,470,741	+		LU632_RS12960	0.37	-0.2
2,470,745	+		LU632_RS12960	0.37	+0.5
2,470,796	+		LU632_RS12960	0.40	-3.3
2,470,799	+		LU632_RS12960	0.40	-1.4
2,470,871	-		LU632_RS12960	0.44	+1.1
2,470,895	+		LU632_RS12960	0.45	+1.1
2,470,927	+		LU632_RS12960	0.47	+0.2
2,470,941	+		LU632_RS12960	0.47	-1.5
2,470,946	-		LU632_RS12960	0.48	+0.6
2,470,966	+		LU632_RS12960	0.49	-0.9
2,470,967	-		LU632_RS12960	0.49	+1.3
2,470,979	+		LU632_RS12960	0.49	-0.6
2,470,980	-		LU632_RS12960	0.49	+0.1
2,471,113	+		LU632_RS12960	0.56	-1.5
2,471,113	+		LU632_RS12960	0.56	+0.8
2,471,113	+		LU632_RS12960	0.56	+0.0
2,471,114	-		LU632_RS12960	0.56	+0.3
2,471,142	-		LU632_RS12960	0.58	-0.5
2,471,154	+		LU632_RS12960	0.58	+0.3
2,471,154	+		LU632_RS12960	0.58	-1.1
2,471,154	+		LU632_RS12960	0.58	-0.6
2,471,154	+		LU632_RS12960	0.58	+0.6
2,471,154	+		LU632_RS12960	0.58	+2.1
2,471,154	+		LU632_RS12960	0.58	+0.2
2,471,154	+		LU632_RS12960	0.58	-0.5
2,471,154	+		LU632_RS12960	0.58	+0.6
2,471,155	-		LU632_RS12960	0.58	-0.1
2,471,155	-		LU632_RS12960	0.58	+0.6
2,471,155	-		LU632_RS12960	0.58	-3.5
2,471,155	-		LU632_RS12960	0.58	-2.1
2,471,155	-		LU632_RS12960	0.58	-0.4
2,471,204	-		LU632_RS12960	0.61	+0.8
2,471,300	+		LU632_RS12960	0.66	+0.7
2,471,408	+		LU632_RS12960	0.72	+0.8
2,471,409	-		LU632_RS12960	0.72	+0.9
2,471,424	-		LU632_RS12960	0.73	+0.5
2,471,551	-		LU632_RS12960	0.79	-1.8
2,471,597	-		LU632_RS12960	0.82	-2.8
2,471,614	-		LU632_RS12960	0.82	+1.1
2,471,614	-		LU632_RS12960	0.82	+0.2
2,471,619	+		LU632_RS12960	0.83	+0.7
2,471,620	-		LU632_RS12960	0.83	-3.3
2,471,620	-		LU632_RS12960	0.83	+1.2
2,471,688	+		LU632_RS12960	0.86	-0.7
2,471,786	+				-1.7
2,471,788	+				+0.7
2,471,789	-				-0.7
2,471,789	-				+0.6
2,471,840	+				+1.9
2,471,840	+				+0.2
2,471,841	-				-2.7
2,471,841	-				+1.4
2,471,850	-				+0.1
2,471,985	+				+0.4
2,472,057	-				+0.2
2,472,111	+				+0.6
2,472,123	+				+0.3
2,472,124	-				-0.7
2,472,125	+				-0.2
2,472,135	+				+0.8
2,472,139	-				+2.5
2,472,226	+				+1.3
2,472,226	+				-1.4
2,472,226	+				+0.7
2,472,295	+		LU632_RS12965	0.14	+0.3
2,472,346	-		LU632_RS12965	0.23	-1.6
2,472,425	+		LU632_RS12965	0.37	+1.2
2,472,425	+		LU632_RS12965	0.37	+0.3
2,472,446	+		LU632_RS12965	0.41	+1.2
2,472,586	-		LU632_RS12965	0.66	+0.2
2,472,630	-		LU632_RS12965	0.74	-1.1
2,472,630	-		LU632_RS12965	0.74	+0.1
2,472,645	+		LU632_RS12965	0.77	+0.5
2,472,671	+		LU632_RS12965	0.82	-1.4
2,472,671	+		LU632_RS12965	0.82	-0.5
2,472,770	+				+0.8
2,472,770	+				+1.7
2,472,771	-				-0.4
2,472,771	-				+1.5
2,472,927	+				-3.3
2,472,927	+				-0.4
2,472,927	+				+2.1
2,472,928	-				+0.6
2,472,928	-				-1.3
2,472,939	-				-0.7