Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12655

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS12640 and LU632_RS12645 overlap by 66 nucleotidesLU632_RS12645 and LU632_RS12650 are separated by 72 nucleotidesLU632_RS12650 and LU632_RS12655 are separated by 123 nucleotidesLU632_RS12655 and tnpA are separated by 118 nucleotidestnpA and LU632_RS12665 are separated by 97 nucleotidesLU632_RS12665 and LU632_RS12670 are separated by 10 nucleotides LU632_RS12640: LU632_RS12640 - IS1 family transposase, at 2,407,532 to 2,408,229 _RS12640 LU632_RS12645: LU632_RS12645 - hypothetical protein, at 2,408,164 to 2,408,334 _RS12645 LU632_RS12650: LU632_RS12650 - IS5/IS1182 family transposase, at 2,408,407 to 2,408,538 _RS12650 LU632_RS12655: LU632_RS12655 - transposase, at 2,408,662 to 2,409,824 _RS12655 LU632_RS12660: tnpA - IS200/IS605 family transposase, at 2,409,943 to 2,410,308 tnpA LU632_RS12665: LU632_RS12665 - YdbL family protein, at 2,410,406 to 2,410,732 _RS12665 LU632_RS12670: LU632_RS12670 - YnbE family lipoprotein, at 2,410,743 to 2,410,931 _RS12670 Position (kb) 2408 2409 2410Strain fitness (log2 ratio) -2 -1 0 1 2at 2408.254 kb on + strand, within LU632_RS12645at 2408.394 kb on + strandat 2408.419 kb on - strandat 2408.419 kb on - strandat 2408.520 kb on + strand, within LU632_RS12650at 2408.544 kb on + strandat 2409.420 kb on + strand, within LU632_RS12655at 2410.345 kb on + strandat 2410.345 kb on + strandat 2410.449 kb on + strand, within LU632_RS12665at 2410.449 kb on + strand, within LU632_RS12665at 2410.449 kb on + strand, within LU632_RS12665at 2410.450 kb on + strand, within LU632_RS12665at 2410.669 kb on + strand, within LU632_RS12665at 2410.669 kb on + strand, within LU632_RS12665at 2410.720 kb on - strandat 2410.788 kb on - strand, within LU632_RS12670at 2410.792 kb on - strand, within LU632_RS12670at 2410.796 kb on + strand, within LU632_RS12670

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
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2,408,254 + LU632_RS12645 0.53 +0.9
2,408,394 + -0.5
2,408,419 - -0.8
2,408,419 - -0.7
2,408,520 + LU632_RS12650 0.86 +0.4
2,408,544 + -1.4
2,409,420 + LU632_RS12655 0.65 +1.9
2,410,345 + -2.4
2,410,345 + +0.6
2,410,449 + LU632_RS12665 0.13 +0.8
2,410,449 + LU632_RS12665 0.13 -0.3
2,410,449 + LU632_RS12665 0.13 +2.4
2,410,450 + LU632_RS12665 0.13 -0.3
2,410,669 + LU632_RS12665 0.80 +0.3
2,410,669 + LU632_RS12665 0.80 -0.9
2,410,720 - -1.1
2,410,788 - LU632_RS12670 0.24 +2.1
2,410,792 - LU632_RS12670 0.26 +0.9
2,410,796 + LU632_RS12670 0.28 +1.5

Or see this region's nucleotide sequence