Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11940

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
2,258,220	-		LU632_RS11925	0.35	-0.9
2,258,249	+		LU632_RS11925	0.45	-0.9
2,258,250	-		LU632_RS11925	0.45	+1.4
2,258,317	-		LU632_RS11925	0.69	-0.5
2,258,317	-		LU632_RS11925	0.69	-1.0
2,258,646	+		LU632_RS11935	0.16	-2.9
2,258,646	+		LU632_RS11935	0.16	+0.6
2,258,647	-		LU632_RS11935	0.16	-0.4
2,258,647	-		LU632_RS11935	0.16	-2.9
2,258,647	-		LU632_RS11935	0.16	-0.3
2,258,647	-		LU632_RS11935	0.16	+2.1
2,258,665	-		LU632_RS11935	0.22	-0.3
2,258,748	+		LU632_RS11935	0.50	-1.3
2,258,748	+		LU632_RS11935	0.50	+0.2
2,258,749	-		LU632_RS11935	0.50	-0.2
2,258,749	-		LU632_RS11935	0.50	+0.7
2,258,847	-		LU632_RS11935	0.83	+1.6
2,258,847	-		LU632_RS11935	0.83	-1.0
2,258,848	+		LU632_RS11935	0.83	+0.7
2,258,848	+		LU632_RS11935	0.83	+0.8
2,258,848	+		LU632_RS11935	0.83	+1.3
2,258,849	-		LU632_RS11935	0.83	+3.1
2,258,927	-				-1.4
2,258,927	-				-0.7
2,258,927	-				-1.2
2,258,930	-				+0.5
2,258,950	+				+0.5
2,258,964	-				+0.2
2,259,056	-				-1.8
2,259,198	+		LU632_RS11940	0.17	+0.3
2,259,201	+		LU632_RS11940	0.17	-0.1
2,259,331	+		LU632_RS11940	0.28	+0.5
2,259,331	+		LU632_RS11940	0.28	-0.1
2,259,332	-		LU632_RS11940	0.28	-0.1
2,259,365	-		LU632_RS11940	0.30	+3.3
2,259,602	+		LU632_RS11940	0.49	+0.5
2,259,621	+		LU632_RS11940	0.51	+0.7
2,259,665	+		LU632_RS11940	0.54	+0.4
2,259,757	+		LU632_RS11940	0.62	-0.8
2,259,758	-		LU632_RS11940	0.62	+2.0
2,259,934	+		LU632_RS11940	0.76	+2.0
2,259,949	-		LU632_RS11940	0.77	-1.1
2,260,012	+		LU632_RS11940	0.82	-0.6
2,260,067	+		LU632_RS11940	0.86	-1.4
2,260,067	+		LU632_RS11940	0.86	-0.8
2,260,104	+		LU632_RS11940	0.89	+0.1
2,260,105	-		LU632_RS11940	0.89	-0.2
2,260,105	-		LU632_RS11940	0.89	-2.2
2,260,167	+				-0.9
2,260,167	+				+3.2
2,260,167	+				-0.4
2,260,298	+				-0.3
2,260,302	+				+0.9
2,260,303	-				+0.6
2,260,303	-				-2.4
2,260,421	+				-2.4
2,260,421	+				+1.0
2,260,421	+				-0.4
2,260,622	+				-2.0
2,260,626	+				-0.0
2,260,654	+				-0.3
2,260,654	+				+0.5
2,260,655	-				+0.3
2,260,658	+				-0.8
2,260,658	+				+0.4
2,260,658	+				-0.7
2,260,870	+				-1.4
2,260,871	-				+1.0
2,260,890	+				-0.1
2,260,891	-				+1.6
2,260,891	-				-0.4
2,260,921	+				-3.1
2,260,938	+				+1.2
2,260,939	-				+1.4
2,260,939	-				-1.1
2,260,944	-				+0.8
2,261,112	+				+4.0
2,261,112	+				-0.7
2,261,113	-				-2.5
2,261,140	+		LU632_RS11945	0.11	+0.0
2,261,140	+		LU632_RS11945	0.11	+0.9