Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11175

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
2,136,506	+		LU632_RS11170	0.49	-2.2
2,136,507	-		LU632_RS11170	0.49	+1.0
2,136,507	-		LU632_RS11170	0.49	-2.2
2,136,507	-		LU632_RS11170	0.49	+0.9
2,136,507	-		LU632_RS11170	0.49	+0.8
2,136,526	+		LU632_RS11170	0.50	+0.0
2,136,526	+		LU632_RS11170	0.50	+0.8
2,136,787	-		LU632_RS11170	0.69	-3.5
2,136,819	+		LU632_RS11170	0.72	-1.0
2,136,888	+		LU632_RS11170	0.77	-0.1
2,136,888	+		LU632_RS11170	0.77	+1.8
2,136,921	-		LU632_RS11170	0.79	+0.6
2,136,933	+		LU632_RS11170	0.80	-1.6
2,136,984	+		LU632_RS11170	0.84	+0.9
2,136,984	+		LU632_RS11170	0.84	-0.5
2,136,984	+		LU632_RS11170	0.84	-0.8
2,136,985	-		LU632_RS11170	0.84	+0.0
2,136,985	-		LU632_RS11170	0.84	+1.5
2,136,985	-		LU632_RS11170	0.84	-1.8
2,136,996	-		LU632_RS11170	0.85	-0.4
2,136,996	-		LU632_RS11170	0.85	-1.4
2,137,036	+		LU632_RS11170	0.87	+0.4
2,137,036	+		LU632_RS11170	0.87	+0.2
2,137,160	+				+0.2
2,137,162	+				+0.9
2,137,211	+				-0.1
2,137,212	-				+0.9
2,137,212	-				+0.5
2,137,212	-				-1.3
2,137,272	-				-1.8
2,137,272	-				+0.2
2,137,272	-				+1.1
2,137,343	+				+0.9
2,137,368	-				+0.4
2,137,368	-				-2.0
2,137,368	-				+1.6
2,137,372	+				-1.7
2,137,386	+				-0.6
2,137,387	-				+1.5
2,137,431	+				+1.8
2,138,137	+				+1.2
2,138,138	-				-0.5
2,138,274	-				+0.8
2,138,276	+				-0.7
2,138,276	+				-0.0
2,138,307	+				+0.2
2,138,308	-				+0.5
2,138,412	+				+0.3
2,138,452	-				+1.2
2,138,502	+				+0.2
2,138,502	+				+0.2
2,138,503	-				+1.2
2,138,509	-		LU632_RS11180	0.10	+0.2
2,138,542	+		LU632_RS11180	0.13	-1.5
2,138,560	-		LU632_RS11180	0.15	-0.4
2,138,620	+		LU632_RS11180	0.20	+0.4
2,138,780	+		LU632_RS11180	0.33	+1.3
2,138,781	-		LU632_RS11180	0.33	-0.2
2,138,815	+		LU632_RS11180	0.36	-3.5
2,138,840	+		LU632_RS11180	0.38	+3.1
2,138,841	-		LU632_RS11180	0.38	-0.5
2,138,841	-		LU632_RS11180	0.38	-2.2
2,138,841	-		LU632_RS11180	0.38	-0.1
2,138,886	+		LU632_RS11180	0.42	+2.2
2,138,937	-		LU632_RS11180	0.47	+0.9
2,138,975	-		LU632_RS11180	0.50	-0.1
2,139,081	+		LU632_RS11180	0.59	+0.4
2,139,127	+		LU632_RS11180	0.63	-0.1