Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10910

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinfC and rpmI are separated by 96 nucleotidesrpmI and rplT are separated by 38 nucleotidesrplT and LU632_RS10910 are separated by 131 nucleotidesLU632_RS10910 and pheS are separated by 156 nucleotides LU632_RS10895: infC - translation initiation factor IF-3, at 2,082,092 to 2,082,643 infC LU632_RS10900: rpmI - 50S ribosomal protein L35, at 2,082,740 to 2,082,937 rpmI LU632_RS10905: rplT - 50S ribosomal protein L20, at 2,082,976 to 2,083,332 rplT LU632_RS10910: LU632_RS10910 - hypothetical protein, at 2,083,464 to 2,083,505 _RS10910 LU632_RS10915: pheS - phenylalanine--tRNA ligase subunit alpha, at 2,083,662 to 2,084,645 pheS Position (kb) 2083 2084Strain fitness (log2 ratio) -2 -1 0 1at 2082.648 kb on + strandat 2082.656 kb on + strandat 2082.935 kb on + strandat 2082.935 kb on + strandat 2082.935 kb on + strandat 2083.496 kb on + strand, within LU632_RS10910

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
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2,082,648 + -1.5
2,082,656 + -0.3
2,082,935 + -2.7
2,082,935 + -0.6
2,082,935 + -1.7
2,083,496 + LU632_RS10910 0.76 -1.9

Or see this region's nucleotide sequence