Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10155

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
1,941,421	+	rutA	LU632_RS10150	0.35	-1.3
1,941,422	-	rutA	LU632_RS10150	0.35	+0.9
1,941,476	+	rutA	LU632_RS10150	0.40	-0.7
1,941,504	-	rutA	LU632_RS10150	0.42	-1.2
1,941,526	+	rutA	LU632_RS10150	0.44	-0.5
1,941,648	+	rutA	LU632_RS10150	0.56	+0.8
1,941,648	+	rutA	LU632_RS10150	0.56	-1.0
1,941,695	-	rutA	LU632_RS10150	0.60	+0.2
1,941,760	+	rutA	LU632_RS10150	0.66	-1.8
1,941,816	-	rutA	LU632_RS10150	0.71	+0.4
1,941,883	+	rutA	LU632_RS10150	0.77	-1.2
1,941,883	+	rutA	LU632_RS10150	0.77	-1.3
1,941,883	+	rutA	LU632_RS10150	0.77	+0.4
1,941,884	-	rutA	LU632_RS10150	0.77	-4.5
1,941,884	-	rutA	LU632_RS10150	0.77	-1.2
1,942,064	+				+0.9
1,942,065	-				-0.2
1,942,065	-				+0.1
1,942,066	+				-1.4
1,942,066	+				-0.1
1,942,067	-				+1.4
1,942,067	-				+2.2
1,942,067	-				+0.5
1,942,067	-				+2.1
1,942,116	-				+1.1
1,942,119	+				-1.8
1,942,144	+				+0.1
1,942,160	+				-2.5
1,942,163	+				+2.2
1,942,180	-				+0.1
1,942,183	+				+0.4
1,942,184	-				-1.6
1,942,184	-				-1.5
1,942,362	-				+0.7
1,942,406	+				-0.1
1,942,551	+	rutR	LU632_RS10155	0.23	-0.3
1,942,594	-	rutR	LU632_RS10155	0.30	-0.6
1,942,620	+	rutR	LU632_RS10155	0.35	+0.7
1,942,621	-	rutR	LU632_RS10155	0.35	-0.6
1,942,622	+	rutR	LU632_RS10155	0.35	+0.9
1,942,667	+	rutR	LU632_RS10155	0.43	-0.7
1,942,667	+	rutR	LU632_RS10155	0.43	+1.4
1,942,667	+	rutR	LU632_RS10155	0.43	+0.5
1,942,667	+	rutR	LU632_RS10155	0.43	-0.8
1,942,667	+	rutR	LU632_RS10155	0.43	+0.4
1,942,668	-	rutR	LU632_RS10155	0.43	+0.4
1,942,668	-	rutR	LU632_RS10155	0.43	-2.2
1,942,752	+	rutR	LU632_RS10155	0.58	+0.6
1,942,988	-				+1.2
1,943,010	+				-2.8
1,943,011	-				-0.6
1,943,121	-				+0.1
1,943,177	+				-3.2
1,943,177	+				-3.2
1,943,212	+	cycA	LU632_RS10160	0.11	-0.5
1,943,212	+	cycA	LU632_RS10160	0.11	-1.0
1,943,212	+	cycA	LU632_RS10160	0.11	-0.2
1,943,213	-	cycA	LU632_RS10160	0.11	-1.3
1,943,213	-	cycA	LU632_RS10160	0.11	-0.7
1,943,213	-	cycA	LU632_RS10160	0.11	-1.4
1,943,213	-	cycA	LU632_RS10160	0.11	-3.4
1,943,213	-	cycA	LU632_RS10160	0.11	-2.2
1,943,213	-	cycA	LU632_RS10160	0.11	+2.1
1,943,223	-	cycA	LU632_RS10160	0.11	-1.3
1,943,236	-	cycA	LU632_RS10160	0.12	-0.7
1,943,252	+	cycA	LU632_RS10160	0.14	-2.7
1,943,253	-	cycA	LU632_RS10160	0.14	-1.6
1,943,283	+	cycA	LU632_RS10160	0.16	-1.5
1,943,283	+	cycA	LU632_RS10160	0.16	-0.7
1,943,314	+	cycA	LU632_RS10160	0.18	-1.8
1,943,377	-	cycA	LU632_RS10160	0.22	+2.7
1,943,467	+	cycA	LU632_RS10160	0.29	-0.7
1,943,496	+	cycA	LU632_RS10160	0.31	+0.2
1,943,496	+	cycA	LU632_RS10160	0.31	-0.7
1,943,496	+	cycA	LU632_RS10160	0.31	-2.2
1,943,497	-	cycA	LU632_RS10160	0.31	-0.0
1,943,497	-	cycA	LU632_RS10160	0.31	+0.6
1,943,686	-	cycA	LU632_RS10160	0.45	-2.5
1,943,695	+	cycA	LU632_RS10160	0.45	-1.3
1,943,741	-	cycA	LU632_RS10160	0.48	-1.2
1,943,848	+	cycA	LU632_RS10160	0.56	+0.5
1,943,849	-	cycA	LU632_RS10160	0.56	+0.5
1,943,885	-	cycA	LU632_RS10160	0.59	-0.9
1,943,887	+	cycA	LU632_RS10160	0.59	-2.2
1,943,888	-	cycA	LU632_RS10160	0.59	+0.2
1,943,910	-	cycA	LU632_RS10160	0.61	-1.5
1,943,996	+	cycA	LU632_RS10160	0.67	-2.0