Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08985

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
1,692,947	+		LU632_RS08975	0.50	+0.2
1,692,948	-		LU632_RS08975	0.51	+0.5
1,692,948	-		LU632_RS08975	0.51	+0.4
1,692,973	+		LU632_RS08975	0.67	+0.6
1,692,985	-		LU632_RS08975	0.74	+1.3
1,693,134	-				-0.2
1,693,136	+				+0.3
1,693,148	-				-1.6
1,693,204	-				+1.9
1,693,248	+				+0.6
1,693,251	+	modA	LU632_RS08980	0.10	-1.7
1,693,251	+	modA	LU632_RS08980	0.10	+0.4
1,693,297	-	modA	LU632_RS08980	0.16	-0.6
1,693,297	-	modA	LU632_RS08980	0.16	+1.9
1,693,329	-	modA	LU632_RS08980	0.20	-0.4
1,693,329	-	modA	LU632_RS08980	0.20	+0.9
1,693,432	+	modA	LU632_RS08980	0.34	-0.8
1,693,432	+	modA	LU632_RS08980	0.34	+0.9
1,693,432	+	modA	LU632_RS08980	0.34	+1.1
1,693,433	-	modA	LU632_RS08980	0.34	-1.3
1,693,433	-	modA	LU632_RS08980	0.34	-0.6
1,693,538	+	modA	LU632_RS08980	0.47	+0.2
1,693,538	+	modA	LU632_RS08980	0.47	-0.6
1,693,538	+	modA	LU632_RS08980	0.47	-0.5
1,693,538	+	modA	LU632_RS08980	0.47	+0.5
1,693,538	+	modA	LU632_RS08980	0.47	+0.3
1,693,621	+	modA	LU632_RS08980	0.58	-0.7
1,693,621	+	modA	LU632_RS08980	0.58	+0.2
1,693,621	+	modA	LU632_RS08980	0.58	-0.1
1,693,622	-	modA	LU632_RS08980	0.58	-1.1
1,693,622	-	modA	LU632_RS08980	0.58	-1.3
1,693,622	-	modA	LU632_RS08980	0.58	-2.1
1,693,622	-	modA	LU632_RS08980	0.58	-0.1
1,693,622	-	modA	LU632_RS08980	0.58	-0.0
1,693,622	-	modA	LU632_RS08980	0.58	-1.5
1,693,622	-	modA	LU632_RS08980	0.58	+1.7
1,693,747	+	modA	LU632_RS08980	0.74	-0.8
1,693,812	+	modA	LU632_RS08980	0.83	+0.6
1,693,826	-	modA	LU632_RS08980	0.85	-0.3
1,693,886	+				+1.3
1,693,886	+				-1.1
1,694,033	-	modB	LU632_RS08985	0.14	-0.2
1,694,128	-	modB	LU632_RS08985	0.27	-0.4
1,694,165	-	modB	LU632_RS08985	0.33	+0.6
1,694,178	+	modB	LU632_RS08985	0.34	+2.1
1,694,178	+	modB	LU632_RS08985	0.34	-0.8
1,694,179	-	modB	LU632_RS08985	0.35	-1.0
1,694,179	-	modB	LU632_RS08985	0.35	-0.1
1,694,181	-	modB	LU632_RS08985	0.35	-0.0
1,694,441	+	modB	LU632_RS08985	0.72	-0.1
1,694,442	-	modB	LU632_RS08985	0.72	+1.4
1,694,493	+	modB	LU632_RS08985	0.80	+0.3
1,694,493	+	modB	LU632_RS08985	0.80	+1.0
1,694,493	+	modB	LU632_RS08985	0.80	-1.3
1,694,493	+	modB	LU632_RS08985	0.80	-0.1
1,694,493	+	modB	LU632_RS08985	0.80	-0.8
1,694,494	-	modB	LU632_RS08985	0.80	-0.3
1,694,494	-	modB	LU632_RS08985	0.80	-0.5
1,694,494	-	modB	LU632_RS08985	0.80	-0.3
1,694,494	-	modB	LU632_RS08985	0.80	+0.1
1,694,494	-	modB	LU632_RS08985	0.80	+1.2
1,694,495	+	modB	LU632_RS08985	0.80	+1.8
1,694,495	+	modB	LU632_RS08985	0.80	-1.8
1,694,495	+	modB	LU632_RS08985	0.80	+1.5
1,694,632	-				-1.7
1,694,632	-				-0.4
1,694,632	-				+0.1
1,694,671	+				+0.3
1,694,746	-	modC	LU632_RS08990	0.11	-0.6
1,694,750	-	modC	LU632_RS08990	0.12	-0.5
1,694,922	-	modC	LU632_RS08990	0.28	+1.2
1,695,111	+	modC	LU632_RS08990	0.46	+1.1
1,695,115	+	modC	LU632_RS08990	0.46	-1.0
1,695,116	-	modC	LU632_RS08990	0.46	-2.1
1,695,116	-	modC	LU632_RS08990	0.46	-1.4
1,695,127	-	modC	LU632_RS08990	0.47	-0.1
1,695,139	-	modC	LU632_RS08990	0.48	-0.7
1,695,176	+	modC	LU632_RS08990	0.52	-0.7
1,695,176	+	modC	LU632_RS08990	0.52	-2.2
1,695,177	-	modC	LU632_RS08990	0.52	+0.5
1,695,223	-	modC	LU632_RS08990	0.56	-1.0
1,695,223	-	modC	LU632_RS08990	0.56	+1.5
1,695,223	-	modC	LU632_RS08990	0.56	+2.9
1,695,223	-	modC	LU632_RS08990	0.56	-0.6
1,695,228	+	modC	LU632_RS08990	0.57	+2.8
1,695,362	+	modC	LU632_RS08990	0.69	+0.4
1,695,397	+	modC	LU632_RS08990	0.73	-1.1
1,695,397	+	modC	LU632_RS08990	0.73	+0.6
1,695,397	+	modC	LU632_RS08990	0.73	+2.2
1,695,398	-	modC	LU632_RS08990	0.73	-0.1
1,695,511	+	modC	LU632_RS08990	0.83	+0.6
1,695,555	+	modC	LU632_RS08990	0.88	+0.4
1,695,579	+	modC	LU632_RS08990	0.90	+0.5
1,695,602	-				-1.6