Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnpA and LU632_RS08900 are separated by 764 nucleotides LU632_RS08900 and LU632_RS08905 are separated by 41 nucleotides LU632_RS08905 and LU632_RS08910 are separated by 87 nucleotides
LU632_RS08895: tnpA - IS200/IS605 family transposase, at 1,680,349 to 1,680,765
tnpA
LU632_RS08900: LU632_RS08900 - IS5 family transposase, at 1,681,530 to 1,682,320
_RS08900
LU632_RS08905: LU632_RS08905 - hypothetical protein, at 1,682,362 to 1,682,760
_RS08905
LU632_RS08910: LU632_RS08910 - hypothetical protein, at 1,682,848 to 1,683,159
_RS08910
Position (kb) 1681
1682
1683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1680.942 kb on + strand at 1680.964 kb on + strand at 1680.965 kb on - strand at 1681.059 kb on + strand at 1681.059 kb on + strand at 1681.060 kb on - strand at 1681.060 kb on - strand at 1681.060 kb on - strand at 1681.060 kb on - strand at 1681.135 kb on - strand at 1681.135 kb on - strand at 1681.178 kb on - strand at 1681.178 kb on - strand at 1681.230 kb on - strand at 1681.233 kb on - strand at 1681.243 kb on - strand at 1681.247 kb on + strand at 1681.247 kb on + strand at 1681.247 kb on + strand at 1681.248 kb on - strand at 1681.249 kb on + strand at 1681.250 kb on - strand at 1681.250 kb on - strand at 1681.250 kb on - strand at 1681.260 kb on + strand at 1681.337 kb on + strand at 1681.386 kb on + strand at 1681.457 kb on + strand at 1681.457 kb on + strand at 1681.460 kb on - strand at 1681.469 kb on - strand at 1681.497 kb on - strand at 1682.308 kb on + strand at 1682.571 kb on - strand, within LU632_RS08905 at 1682.592 kb on + strand, within LU632_RS08905 at 1682.614 kb on + strand, within LU632_RS08905 at 1682.615 kb on - strand, within LU632_RS08905 at 1682.615 kb on - strand, within LU632_RS08905 at 1682.678 kb on + strand, within LU632_RS08905 at 1682.747 kb on + strand at 1682.747 kb on + strand at 1682.748 kb on - strand at 1682.748 kb on - strand at 1682.751 kb on + strand at 1682.779 kb on - strand at 1682.779 kb on - strand at 1682.901 kb on + strand, within LU632_RS08910 at 1682.911 kb on + strand, within LU632_RS08910 at 1682.911 kb on + strand, within LU632_RS08910 at 1682.911 kb on + strand, within LU632_RS08910 at 1682.911 kb on + strand, within LU632_RS08910 at 1682.911 kb on + strand, within LU632_RS08910 at 1682.912 kb on - strand, within LU632_RS08910 at 1682.912 kb on - strand, within LU632_RS08910 at 1682.912 kb on - strand, within LU632_RS08910 at 1683.066 kb on + strand, within LU632_RS08910 at 1683.066 kb on + strand, within LU632_RS08910 at 1683.079 kb on - strand, within LU632_RS08910 at 1683.106 kb on - strand, within LU632_RS08910 at 1683.191 kb on - strand at 1683.211 kb on + strand at 1683.212 kb on - strand at 1683.261 kb on + strand at 1683.269 kb on + strand at 1683.313 kb on - strand at 1683.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) remove 1,680,942 + +0.9 1,680,964 + +1.4 1,680,965 - -1.2 1,681,059 + -1.4 1,681,059 + -0.3 1,681,060 - +1.5 1,681,060 - -0.7 1,681,060 - +0.1 1,681,060 - -0.1 1,681,135 - +1.4 1,681,135 - +0.5 1,681,178 - -0.7 1,681,178 - -0.8 1,681,230 - -2.4 1,681,233 - -1.7 1,681,243 - -0.3 1,681,247 + +0.4 1,681,247 + +0.9 1,681,247 + -1.1 1,681,248 - -0.6 1,681,249 + -1.0 1,681,250 - +1.6 1,681,250 - +0.3 1,681,250 - -1.9 1,681,260 + +0.8 1,681,337 + +0.5 1,681,386 + +0.8 1,681,457 + -0.1 1,681,457 + -0.0 1,681,460 - +0.9 1,681,469 - -0.1 1,681,497 - +0.6 1,682,308 + +1.1 1,682,571 - LU632_RS08905 0.52 +0.1 1,682,592 + LU632_RS08905 0.58 +2.6 1,682,614 + LU632_RS08905 0.63 -0.5 1,682,615 - LU632_RS08905 0.63 +0.6 1,682,615 - LU632_RS08905 0.63 -2.5 1,682,678 + LU632_RS08905 0.79 +0.4 1,682,747 + +0.4 1,682,747 + +0.6 1,682,748 - -2.0 1,682,748 - -0.2 1,682,751 + +1.5 1,682,779 - -1.0 1,682,779 - -3.2 1,682,901 + LU632_RS08910 0.17 -1.2 1,682,911 + LU632_RS08910 0.20 -1.0 1,682,911 + LU632_RS08910 0.20 -0.9 1,682,911 + LU632_RS08910 0.20 +0.3 1,682,911 + LU632_RS08910 0.20 +0.0 1,682,911 + LU632_RS08910 0.20 -2.2 1,682,912 - LU632_RS08910 0.21 -0.0 1,682,912 - LU632_RS08910 0.21 +0.7 1,682,912 - LU632_RS08910 0.21 -0.8 1,683,066 + LU632_RS08910 0.70 -0.6 1,683,066 + LU632_RS08910 0.70 +1.2 1,683,079 - LU632_RS08910 0.74 +1.0 1,683,106 - LU632_RS08910 0.83 +2.5 1,683,191 - -2.3 1,683,211 + +0.5 1,683,212 - +0.9 1,683,261 + +0.7 1,683,269 + -2.0 1,683,313 - +1.2 1,683,318 - -0.7
Or see this region's nucleotide sequence