Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08345

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
1,568,640	+		LU632_RS08335	0.57	-1.7
1,568,685	-		LU632_RS08335	0.63	-3.4
1,569,084	+		LU632_RS08340	0.14	-0.3
1,569,085	-		LU632_RS08340	0.14	-0.7
1,569,085	-		LU632_RS08340	0.14	-1.1
1,569,086	+		LU632_RS08340	0.14	+1.5
1,569,109	-		LU632_RS08340	0.18	+0.5
1,569,165	+		LU632_RS08340	0.27	+1.1
1,569,189	+		LU632_RS08340	0.31	+1.0
1,569,189	+		LU632_RS08340	0.31	+2.0
1,569,192	-		LU632_RS08340	0.31	+0.5
1,569,208	-		LU632_RS08340	0.33	+1.4
1,569,225	-		LU632_RS08340	0.36	+0.4
1,569,417	+		LU632_RS08340	0.66	+0.5
1,569,417	+		LU632_RS08340	0.66	-0.3
1,569,418	-		LU632_RS08340	0.66	+1.1
1,569,418	-		LU632_RS08340	0.66	-2.1
1,569,454	+		LU632_RS08340	0.72	-1.3
1,569,455	-		LU632_RS08340	0.72	-2.0
1,569,455	-		LU632_RS08340	0.72	+0.6
1,569,455	-		LU632_RS08340	0.72	+0.3
1,569,523	+		LU632_RS08340	0.83	+1.0
1,569,548	+		LU632_RS08340	0.87	+2.2
1,569,549	-		LU632_RS08340	0.87	+0.1
1,569,549	-		LU632_RS08340	0.87	+0.3
1,569,641	+				-0.6
1,569,652	+				-0.1
1,569,652	+				+1.0
1,569,652	+				+1.8
1,569,741	+				-3.5
1,569,805	-				+0.5
1,569,829	+				+0.9
1,569,861	+		LU632_RS08345	0.11	+0.3
1,569,862	-		LU632_RS08345	0.11	+1.2
1,570,074	-		LU632_RS08345	0.22	-0.5
1,570,074	-		LU632_RS08345	0.22	-0.9
1,570,402	+		LU632_RS08345	0.38	-1.0
1,570,403	-		LU632_RS08345	0.38	+0.0
1,570,457	-		LU632_RS08345	0.41	+0.7
1,570,457	-		LU632_RS08345	0.41	-1.1
1,570,464	+		LU632_RS08345	0.41	-0.3
1,570,465	-		LU632_RS08345	0.41	+0.4
1,570,574	-		LU632_RS08345	0.47	-1.3
1,570,743	-		LU632_RS08345	0.55	-0.2
1,570,834	-		LU632_RS08345	0.60	-1.0
1,570,834	-		LU632_RS08345	0.60	-0.5
1,570,898	-		LU632_RS08345	0.63	-0.5
1,570,906	+		LU632_RS08345	0.63	+0.4
1,571,121	-		LU632_RS08345	0.74	-0.3
1,571,170	-		LU632_RS08345	0.76	+0.8
1,571,419	+		LU632_RS08345	0.89	-2.5
1,571,419	+		LU632_RS08345	0.89	+1.6
1,571,419	+		LU632_RS08345	0.89	-1.0
1,571,419	+		LU632_RS08345	0.89	-2.3
1,571,420	-		LU632_RS08345	0.89	+3.0
1,571,491	+				+0.7
1,571,492	-				+1.3
1,571,526	+				-1.3
1,571,623	+				+0.8
1,571,692	-				-0.3
1,571,701	-				+0.2
1,571,722	+				+0.4
1,571,813	-				-0.3
1,571,866	-				-0.5
1,571,913	-				+1.3
1,571,939	-				+0.6
1,572,058	+		LU632_RS08350	0.45	-2.3
1,572,059	-		LU632_RS08350	0.46	-0.2
1,572,090	-		LU632_RS08350	0.62	-2.7
1,572,091	+		LU632_RS08350	0.62	-0.8
1,572,092	-		LU632_RS08350	0.63	-0.1
1,572,161	+				+3.3