Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06700

Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
1,287,195	+	cysP	LU632_RS06695	0.22	+1.5
1,287,196	-	cysP	LU632_RS06695	0.22	-0.7
1,287,265	-	cysP	LU632_RS06695	0.29	-0.4
1,287,282	+	cysP	LU632_RS06695	0.31	+0.4
1,287,283	-	cysP	LU632_RS06695	0.31	-0.8
1,287,347	-	cysP	LU632_RS06695	0.37	+1.0
1,287,349	+	cysP	LU632_RS06695	0.37	-0.7
1,287,349	+	cysP	LU632_RS06695	0.37	+1.0
1,287,349	+	cysP	LU632_RS06695	0.37	-3.2
1,287,439	-	cysP	LU632_RS06695	0.46	-1.5
1,287,503	+	cysP	LU632_RS06695	0.52	+0.9
1,287,503	+	cysP	LU632_RS06695	0.52	-1.4
1,287,504	-	cysP	LU632_RS06695	0.52	+2.3
1,287,532	-	cysP	LU632_RS06695	0.55	-0.2
1,287,595	-	cysP	LU632_RS06695	0.61	-0.7
1,287,633	-	cysP	LU632_RS06695	0.65	-0.2
1,287,648	+	cysP	LU632_RS06695	0.67	-0.0
1,287,728	+	cysP	LU632_RS06695	0.74	+0.2
1,287,728	+	cysP	LU632_RS06695	0.74	-0.5
1,287,728	+	cysP	LU632_RS06695	0.74	-0.8
1,287,728	+	cysP	LU632_RS06695	0.74	+1.0
1,287,729	-	cysP	LU632_RS06695	0.75	-1.7
1,287,729	-	cysP	LU632_RS06695	0.75	-2.0
1,287,729	-	cysP	LU632_RS06695	0.75	+1.2
1,287,729	-	cysP	LU632_RS06695	0.75	-1.2
1,287,736	+	cysP	LU632_RS06695	0.75	+0.3
1,287,757	+	cysP	LU632_RS06695	0.77	+0.0
1,287,757	+	cysP	LU632_RS06695	0.77	-1.3
1,287,758	-	cysP	LU632_RS06695	0.77	+0.1
1,287,891	-				-3.4
1,288,038	+				-2.3
1,288,043	-				-2.2
1,288,044	+				-0.6
1,288,053	-				-2.1
1,288,071	+				+0.7
1,288,099	-				-0.2
1,288,108	+				-0.1
1,288,143	+				-2.2
1,288,143	+				-0.1
1,288,163	+				-0.1
1,288,163	+				-0.2
1,288,284	+		LU632_RS06700	0.16	+1.2
1,288,284	+		LU632_RS06700	0.16	-0.5
1,288,285	-		LU632_RS06700	0.16	+0.8
1,288,292	-		LU632_RS06700	0.17	+0.3
1,288,292	-		LU632_RS06700	0.17	-1.8
1,288,292	-		LU632_RS06700	0.17	+0.7
1,288,292	-		LU632_RS06700	0.17	-1.7
1,288,334	-		LU632_RS06700	0.24	+1.6
1,288,374	+		LU632_RS06700	0.30	-1.6
1,288,555	+		LU632_RS06700	0.60	+0.3
1,288,555	+		LU632_RS06700	0.60	+1.3
1,288,556	-		LU632_RS06700	0.60	-1.2
1,288,556	-		LU632_RS06700	0.60	-1.3
1,288,558	-		LU632_RS06700	0.60	-0.3
1,288,562	-		LU632_RS06700	0.61	+1.9
1,288,562	-		LU632_RS06700	0.61	+1.1
1,288,781	+				+1.5
1,288,782	-				+1.1
1,288,805	+				-0.7
1,288,806	-				-3.2
1,288,819	+				+0.9
1,288,822	+				-2.7
1,288,823	-				+1.5
1,288,832	+				-0.1
1,288,872	-				+1.1
1,288,950	+		LU632_RS06705	0.18	+1.3
1,288,951	-		LU632_RS06705	0.18	-1.3
1,289,012	-		LU632_RS06705	0.32	-0.4
1,289,162	-		LU632_RS06705	0.65	+0.6
1,289,206	-		LU632_RS06705	0.75	+0.8
1,289,289	+				-0.3
1,289,289	+				+1.2
1,289,289	+				-1.7
1,289,290	-				-0.8
1,289,290	-				+1.3
1,289,290	-				-0.5
1,289,319	+				-0.3
1,289,319	+				+0.5
1,289,320	-				+1.2
1,289,321	+				-0.2
1,289,329	+				+0.7
1,289,338	-				-1.0
1,289,585	-		LU632_RS06710	0.48	+1.2
1,289,594	+		LU632_RS06710	0.50	+0.5
1,289,595	-		LU632_RS06710	0.50	+2.9
1,289,656	+		LU632_RS06710	0.65	-0.9
1,289,738	-		LU632_RS06710	0.84	-0.1
1,289,738	-		LU632_RS06710	0.84	+0.0
1,289,788	-				+0.8