Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06600 and LU632_RS06605 are separated by 273 nucleotides LU632_RS06605 and crr are separated by 66 nucleotides crr and ptsI are separated by 43 nucleotides
LU632_RS06600: LU632_RS06600 - IS110 family transposase, at 1,267,354 to 1,268,360
_RS06600
LU632_RS06605: LU632_RS06605 - IS481 family transposase, at 1,268,634 to 1,268,942
_RS06605
LU632_RS06610: crr - PTS glucose transporter subunit IIA, at 1,269,009 to 1,269,512
crr
LU632_RS06615: ptsI - phosphoenolpyruvate-protein phosphotransferase PtsI, at 1,269,556 to 1,271,283
ptsI
Position (kb) 1269
1270 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 1268.063 kb on + strand, within LU632_RS06600 at 1268.088 kb on + strand, within LU632_RS06600 at 1268.088 kb on + strand, within LU632_RS06600 at 1268.088 kb on + strand, within LU632_RS06600 at 1268.089 kb on - strand, within LU632_RS06600 at 1268.089 kb on - strand, within LU632_RS06600 at 1268.089 kb on - strand, within LU632_RS06600 at 1268.089 kb on - strand, within LU632_RS06600 at 1268.179 kb on + strand, within LU632_RS06600 at 1268.179 kb on + strand, within LU632_RS06600 at 1268.180 kb on - strand, within LU632_RS06600 at 1268.180 kb on - strand, within LU632_RS06600 at 1268.180 kb on - strand, within LU632_RS06600 at 1268.183 kb on + strand, within LU632_RS06600 at 1268.184 kb on - strand, within LU632_RS06600 at 1268.326 kb on - strand at 1268.345 kb on + strand at 1268.359 kb on - strand at 1268.359 kb on - strand at 1268.381 kb on + strand at 1268.388 kb on + strand at 1268.414 kb on - strand at 1268.486 kb on + strand at 1268.528 kb on + strand at 1268.528 kb on + strand at 1268.577 kb on + strand at 1268.628 kb on - strand at 1268.628 kb on - strand at 1268.628 kb on - strand at 1268.633 kb on - strand at 1268.633 kb on - strand at 1268.644 kb on - strand at 1268.678 kb on + strand, within LU632_RS06605 at 1269.089 kb on + strand, within crr at 1269.099 kb on - strand, within crr at 1269.318 kb on - strand, within crr at 1269.318 kb on - strand, within crr at 1269.318 kb on - strand, within crr at 1269.409 kb on - strand, within crr at 1269.523 kb on + strand at 1269.696 kb on + strand at 1269.746 kb on - strand, within ptsI at 1269.750 kb on + strand, within ptsI at 1269.751 kb on - strand, within ptsI at 1269.751 kb on - strand, within ptsI at 1269.863 kb on + strand, within ptsI at 1269.864 kb on - strand, within ptsI at 1269.877 kb on - strand, within ptsI at 1269.906 kb on + strand, within ptsI at 1269.907 kb on - strand, within ptsI at 1269.907 kb on - strand, within ptsI at 1269.907 kb on - strand, within ptsI at 1269.907 kb on - strand, within ptsI at 1269.908 kb on + strand, within ptsI at 1269.908 kb on + strand, within ptsI at 1270.000 kb on - strand, within ptsI at 1270.079 kb on - strand, within ptsI at 1270.084 kb on - strand, within ptsI at 1270.220 kb on - strand, within ptsI at 1270.251 kb on + strand, within ptsI at 1270.253 kb on + strand, within ptsI at 1270.253 kb on + strand, within ptsI at 1270.253 kb on + strand, within ptsI at 1270.292 kb on - strand, within ptsI at 1270.381 kb on - strand, within ptsI at 1270.400 kb on + strand, within ptsI at 1270.401 kb on - strand, within ptsI at 1270.403 kb on - strand, within ptsI
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) remove 1,268,063 + LU632_RS06600 0.70 -0.4 1,268,088 + LU632_RS06600 0.73 +0.3 1,268,088 + LU632_RS06600 0.73 -0.5 1,268,088 + LU632_RS06600 0.73 +1.5 1,268,089 - LU632_RS06600 0.73 +1.0 1,268,089 - LU632_RS06600 0.73 +0.1 1,268,089 - LU632_RS06600 0.73 -1.1 1,268,089 - LU632_RS06600 0.73 +1.7 1,268,179 + LU632_RS06600 0.82 -0.2 1,268,179 + LU632_RS06600 0.82 +0.7 1,268,180 - LU632_RS06600 0.82 -2.0 1,268,180 - LU632_RS06600 0.82 -1.7 1,268,180 - LU632_RS06600 0.82 -2.1 1,268,183 + LU632_RS06600 0.82 -0.8 1,268,184 - LU632_RS06600 0.82 -0.3 1,268,326 - -0.6 1,268,345 + -1.2 1,268,359 - -0.2 1,268,359 - -0.1 1,268,381 + -1.3 1,268,388 + +1.0 1,268,414 - -0.5 1,268,486 + -0.1 1,268,528 + +0.1 1,268,528 + +0.8 1,268,577 + -0.6 1,268,628 - -0.1 1,268,628 - -0.1 1,268,628 - +0.3 1,268,633 - +0.8 1,268,633 - +0.7 1,268,644 - -2.7 1,268,678 + LU632_RS06605 0.14 +1.5 1,269,089 + crr LU632_RS06610 0.16 -3.5 1,269,099 - crr LU632_RS06610 0.18 -2.1 1,269,318 - crr LU632_RS06610 0.61 -2.8 1,269,318 - crr LU632_RS06610 0.61 -2.4 1,269,318 - crr LU632_RS06610 0.61 -3.1 1,269,409 - crr LU632_RS06610 0.79 -3.7 1,269,523 + -1.4 1,269,696 + -3.5 1,269,746 - ptsI LU632_RS06615 0.11 -2.4 1,269,750 + ptsI LU632_RS06615 0.11 -3.2 1,269,751 - ptsI LU632_RS06615 0.11 -2.4 1,269,751 - ptsI LU632_RS06615 0.11 -3.4 1,269,863 + ptsI LU632_RS06615 0.18 -4.7 1,269,864 - ptsI LU632_RS06615 0.18 -5.1 1,269,877 - ptsI LU632_RS06615 0.19 -4.5 1,269,906 + ptsI LU632_RS06615 0.20 -4.0 1,269,907 - ptsI LU632_RS06615 0.20 -1.8 1,269,907 - ptsI LU632_RS06615 0.20 +0.5 1,269,907 - ptsI LU632_RS06615 0.20 -1.3 1,269,907 - ptsI LU632_RS06615 0.20 -5.5 1,269,908 + ptsI LU632_RS06615 0.20 -2.3 1,269,908 + ptsI LU632_RS06615 0.20 -4.2 1,270,000 - ptsI LU632_RS06615 0.26 -0.1 1,270,079 - ptsI LU632_RS06615 0.30 -5.2 1,270,084 - ptsI LU632_RS06615 0.31 +0.3 1,270,220 - ptsI LU632_RS06615 0.38 -4.0 1,270,251 + ptsI LU632_RS06615 0.40 -5.0 1,270,253 + ptsI LU632_RS06615 0.40 -5.1 1,270,253 + ptsI LU632_RS06615 0.40 -3.8 1,270,253 + ptsI LU632_RS06615 0.40 -1.5 1,270,292 - ptsI LU632_RS06615 0.43 -4.4 1,270,381 - ptsI LU632_RS06615 0.48 -1.1 1,270,400 + ptsI LU632_RS06615 0.49 -2.6 1,270,401 - ptsI LU632_RS06615 0.49 -6.0 1,270,403 - ptsI LU632_RS06615 0.49 -2.7
Or see this region's nucleotide sequence