Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04580 and LU632_RS04585 are separated by 2 nucleotides LU632_RS04585 and LU632_RS04590 are separated by 61 nucleotides LU632_RS04590 and LU632_RS04595 are separated by 190 nucleotides LU632_RS04595 and LU632_RS04600 overlap by 16 nucleotides LU632_RS04600 and LU632_RS04605 are separated by 160 nucleotides
LU632_RS04580: LU632_RS04580 - hypothetical protein, at 897,379 to 897,981
_RS04580
LU632_RS04585: LU632_RS04585 - contact-dependent growth inhibition system immunity protein, at 897,984 to 898,331
_RS04585
LU632_RS04590: LU632_RS04590 - IS481 family transposase, at 898,393 to 899,406
_RS04590
LU632_RS04595: LU632_RS04595 - hypothetical protein, at 899,597 to 899,749
_RS04595
LU632_RS04600: LU632_RS04600 - hypothetical protein, at 899,734 to 900,135
_RS04600
LU632_RS04605: LU632_RS04605 - hypothetical protein, at 900,296 to 901,408
_RS04605
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.436 kb on + strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.437 kb on - strand at 897.449 kb on + strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.583 kb on - strand, within LU632_RS04580 at 897.586 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.747 kb on - strand, within LU632_RS04580 at 897.759 kb on + strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.762 kb on - strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.842 kb on + strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 897.843 kb on - strand, within LU632_RS04580 at 898.021 kb on + strand, within LU632_RS04585 at 898.022 kb on - strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.025 kb on + strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.026 kb on - strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.029 kb on + strand, within LU632_RS04585 at 898.030 kb on - strand, within LU632_RS04585 at 898.045 kb on - strand, within LU632_RS04585 at 898.062 kb on - strand, within LU632_RS04585 at 898.084 kb on + strand, within LU632_RS04585 at 898.119 kb on - strand, within LU632_RS04585 at 898.311 kb on - strand at 899.511 kb on + strand at 899.567 kb on + strand at 899.623 kb on - strand, within LU632_RS04595 at 899.642 kb on + strand, within LU632_RS04595 at 899.684 kb on - strand, within LU632_RS04595 at 899.708 kb on + strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.709 kb on - strand, within LU632_RS04595 at 899.768 kb on + strand at 899.769 kb on - strand at 899.769 kb on - strand at 899.842 kb on - strand, within LU632_RS04600 at 900.140 kb on + strand at 900.140 kb on + strand at 900.143 kb on - strand at 900.196 kb on + strand at 900.196 kb on + strand at 900.197 kb on - strand at 900.197 kb on - strand at 900.200 kb on + strand at 900.200 kb on + strand at 900.201 kb on - strand at 900.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) remove 897,436 + +0.6 897,436 + -0.4 897,436 + -1.3 897,436 + +1.1 897,436 + -0.3 897,437 - +0.0 897,437 - -2.7 897,437 - +0.3 897,437 - -0.0 897,449 + LU632_RS04580 0.12 +0.2 897,583 - LU632_RS04580 0.34 +0.3 897,583 - LU632_RS04580 0.34 +0.5 897,586 - LU632_RS04580 0.34 -0.1 897,747 - LU632_RS04580 0.61 -0.5 897,747 - LU632_RS04580 0.61 -1.0 897,747 - LU632_RS04580 0.61 -0.2 897,759 + LU632_RS04580 0.63 -1.6 897,762 - LU632_RS04580 0.64 +2.1 897,762 - LU632_RS04580 0.64 -0.9 897,762 - LU632_RS04580 0.64 -1.1 897,842 + LU632_RS04580 0.77 -1.0 897,842 + LU632_RS04580 0.77 +1.5 897,843 - LU632_RS04580 0.77 -1.3 897,843 - LU632_RS04580 0.77 +1.7 898,021 + LU632_RS04585 0.11 -0.1 898,022 - LU632_RS04585 0.11 +0.1 898,025 + LU632_RS04585 0.12 -0.1 898,025 + LU632_RS04585 0.12 +0.8 898,025 + LU632_RS04585 0.12 +1.0 898,025 + LU632_RS04585 0.12 -0.3 898,025 + LU632_RS04585 0.12 -0.5 898,026 - LU632_RS04585 0.12 -0.0 898,026 - LU632_RS04585 0.12 +1.7 898,029 + LU632_RS04585 0.13 +1.1 898,029 + LU632_RS04585 0.13 +0.5 898,030 - LU632_RS04585 0.13 -0.1 898,045 - LU632_RS04585 0.18 -0.4 898,062 - LU632_RS04585 0.22 -1.1 898,084 + LU632_RS04585 0.29 +0.7 898,119 - LU632_RS04585 0.39 -2.2 898,311 - +0.1 899,511 + -0.9 899,567 + -0.5 899,623 - LU632_RS04595 0.17 -1.0 899,642 + LU632_RS04595 0.29 -0.3 899,684 - LU632_RS04595 0.57 -1.1 899,708 + LU632_RS04595 0.73 +1.2 899,709 - LU632_RS04595 0.73 -0.5 899,709 - LU632_RS04595 0.73 +0.2 899,709 - LU632_RS04595 0.73 +1.3 899,709 - LU632_RS04595 0.73 +1.1 899,709 - LU632_RS04595 0.73 +0.3 899,768 + -1.5 899,769 - -2.8 899,769 - +1.9 899,842 - LU632_RS04600 0.27 -0.9 900,140 + -0.5 900,140 + +1.8 900,143 - -3.5 900,196 + -1.3 900,196 + +0.6 900,197 - -0.5 900,197 - +0.2 900,200 + +0.2 900,200 + -0.8 900,201 - +0.3 900,201 - -1.5
Or see this region's nucleotide sequence