Experiment: Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mltD and gloB are separated by 69 nucleotides gloB and LU632_RS01085 are separated by 45 nucleotides LU632_RS01085 and rnhA overlap by 16 nucleotides rnhA and dnaQ are separated by 51 nucleotides
LU632_RS01075: mltD - murein transglycosylase D, at 231,614 to 233,002
mltD
LU632_RS01080: gloB - hydroxyacylglutathione hydrolase, at 233,072 to 233,827
gloB
LU632_RS01085: LU632_RS01085 - class I SAM-dependent methyltransferase, at 233,873 to 234,610
_RS01085
LU632_RS01090: rnhA - ribonuclease HI, at 234,595 to 235,062
rnhA
LU632_RS01095: dnaQ - DNA polymerase III subunit epsilon, at 235,114 to 235,848
dnaQ
Position (kb) 233
234
235 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 232.983 kb on - strand at 233.040 kb on - strand at 233.096 kb on + strand at 233.184 kb on - strand, within gloB at 233.315 kb on - strand, within gloB at 233.326 kb on + strand, within gloB at 233.327 kb on - strand, within gloB at 233.327 kb on - strand, within gloB at 233.485 kb on + strand, within gloB at 233.485 kb on + strand, within gloB at 233.485 kb on + strand, within gloB at 233.485 kb on + strand, within gloB at 233.497 kb on + strand, within gloB at 233.498 kb on - strand, within gloB at 233.498 kb on - strand, within gloB at 233.510 kb on - strand, within gloB at 233.604 kb on + strand, within gloB at 233.711 kb on + strand, within gloB at 233.790 kb on + strand at 233.790 kb on + strand at 233.791 kb on - strand at 233.791 kb on - strand at 233.791 kb on - strand at 233.819 kb on - strand at 233.850 kb on - strand at 233.851 kb on + strand at 234.055 kb on + strand, within LU632_RS01085 at 234.055 kb on + strand, within LU632_RS01085 at 234.370 kb on + strand, within LU632_RS01085 at 234.370 kb on + strand, within LU632_RS01085 at 234.371 kb on - strand, within LU632_RS01085 at 234.375 kb on - strand, within LU632_RS01085 at 234.628 kb on + strand at 234.659 kb on - strand, within rnhA at 234.845 kb on + strand, within rnhA at 234.846 kb on - strand, within rnhA at 234.866 kb on - strand, within rnhA at 235.102 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 2 Petiole 2 (TE-S-M2-P2) remove 232,983 - +0.3 233,040 - -0.5 233,096 + +0.0 233,184 - gloB LU632_RS01080 0.15 +1.1 233,315 - gloB LU632_RS01080 0.32 -0.2 233,326 + gloB LU632_RS01080 0.34 -0.1 233,327 - gloB LU632_RS01080 0.34 -0.7 233,327 - gloB LU632_RS01080 0.34 -2.5 233,485 + gloB LU632_RS01080 0.55 +0.8 233,485 + gloB LU632_RS01080 0.55 -0.5 233,485 + gloB LU632_RS01080 0.55 +0.9 233,485 + gloB LU632_RS01080 0.55 -1.2 233,497 + gloB LU632_RS01080 0.56 -0.3 233,498 - gloB LU632_RS01080 0.56 -1.9 233,498 - gloB LU632_RS01080 0.56 -0.8 233,510 - gloB LU632_RS01080 0.58 -0.2 233,604 + gloB LU632_RS01080 0.70 -1.3 233,711 + gloB LU632_RS01080 0.85 +0.3 233,790 + +0.6 233,790 + -1.9 233,791 - -2.3 233,791 - +0.7 233,791 - -3.8 233,819 - -0.9 233,850 - -3.2 233,851 + -0.6 234,055 + LU632_RS01085 0.25 -2.9 234,055 + LU632_RS01085 0.25 -3.7 234,370 + LU632_RS01085 0.67 -3.6 234,370 + LU632_RS01085 0.67 -2.7 234,371 - LU632_RS01085 0.67 -0.6 234,375 - LU632_RS01085 0.68 +0.4 234,628 + +0.0 234,659 - rnhA LU632_RS01090 0.14 -2.6 234,845 + rnhA LU632_RS01090 0.53 +1.0 234,846 - rnhA LU632_RS01090 0.54 -2.4 234,866 - rnhA LU632_RS01090 0.58 +0.4 235,102 + -1.1
Or see this region's nucleotide sequence