Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS17400 and ABI39_RS17405 are separated by 9 nucleotides ABI39_RS17405 and ABI39_RS17410 are separated by 5 nucleotides ABI39_RS17410 and ABI39_RS17415 are separated by 9 nucleotides ABI39_RS17415 and ABI39_RS17420 are separated by 256 nucleotides
ABI39_RS17400: ABI39_RS17400 - aspartate carbamoyltransferase, at 4,395,625 to 4,396,566
_RS17400
ABI39_RS17405: ABI39_RS17405 - aspartate carbamoyltransferase regulatory subunit, at 4,396,576 to 4,397,043
_RS17405
ABI39_RS17410: ABI39_RS17410 - flavin reductase family protein, at 4,397,049 to 4,397,636
_RS17410
ABI39_RS17415: ABI39_RS17415 - PorT family protein, at 4,397,646 to 4,398,365
_RS17415
ABI39_RS17420: ABI39_RS17420 - serine hydroxymethyltransferase, at 4,398,622 to 4,399,902
_RS17420
Position (kb) 4397
4398 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4396.545 kb on + strand at 4397.041 kb on + strand at 4397.132 kb on + strand, within ABI39_RS17410 at 4397.191 kb on + strand, within ABI39_RS17410 at 4397.197 kb on + strand, within ABI39_RS17410 at 4397.378 kb on + strand, within ABI39_RS17410 at 4397.401 kb on + strand, within ABI39_RS17410 at 4397.402 kb on - strand, within ABI39_RS17410 at 4397.444 kb on + strand, within ABI39_RS17410 at 4397.464 kb on + strand, within ABI39_RS17410 at 4397.488 kb on - strand, within ABI39_RS17410 at 4397.529 kb on - strand, within ABI39_RS17410 at 4397.542 kb on - strand, within ABI39_RS17410 at 4397.838 kb on - strand, within ABI39_RS17415 at 4397.842 kb on + strand, within ABI39_RS17415 at 4397.843 kb on - strand, within ABI39_RS17415 at 4397.906 kb on + strand, within ABI39_RS17415 at 4397.910 kb on + strand, within ABI39_RS17415 at 4397.910 kb on + strand, within ABI39_RS17415 at 4397.913 kb on - strand, within ABI39_RS17415 at 4397.921 kb on + strand, within ABI39_RS17415 at 4397.964 kb on - strand, within ABI39_RS17415 at 4398.017 kb on + strand, within ABI39_RS17415 at 4398.020 kb on - strand, within ABI39_RS17415 at 4398.022 kb on + strand, within ABI39_RS17415 at 4398.022 kb on + strand, within ABI39_RS17415 at 4398.031 kb on - strand, within ABI39_RS17415 at 4398.032 kb on + strand, within ABI39_RS17415 at 4398.033 kb on - strand, within ABI39_RS17415 at 4398.086 kb on - strand, within ABI39_RS17415 at 4398.090 kb on + strand, within ABI39_RS17415 at 4398.091 kb on - strand, within ABI39_RS17415 at 4398.145 kb on + strand, within ABI39_RS17415 at 4398.210 kb on - strand, within ABI39_RS17415 at 4398.212 kb on - strand, within ABI39_RS17415 at 4398.249 kb on - strand, within ABI39_RS17415 at 4398.293 kb on - strand, within ABI39_RS17415 at 4398.399 kb on + strand at 4398.404 kb on + strand at 4398.405 kb on - strand at 4398.405 kb on - strand at 4398.553 kb on - strand at 4398.608 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 4,396,545 + -0.3 4,397,041 + -0.4 4,397,132 + ABI39_RS17410 0.14 +0.1 4,397,191 + ABI39_RS17410 0.24 -0.4 4,397,197 + ABI39_RS17410 0.25 +0.2 4,397,378 + ABI39_RS17410 0.56 +0.2 4,397,401 + ABI39_RS17410 0.60 -0.4 4,397,402 - ABI39_RS17410 0.60 +0.8 4,397,444 + ABI39_RS17410 0.67 -0.3 4,397,464 + ABI39_RS17410 0.71 -0.7 4,397,488 - ABI39_RS17410 0.75 -0.3 4,397,529 - ABI39_RS17410 0.82 -0.7 4,397,542 - ABI39_RS17410 0.84 +0.5 4,397,838 - ABI39_RS17415 0.27 -0.2 4,397,842 + ABI39_RS17415 0.27 +0.1 4,397,843 - ABI39_RS17415 0.27 +1.0 4,397,906 + ABI39_RS17415 0.36 +0.5 4,397,910 + ABI39_RS17415 0.37 +0.3 4,397,910 + ABI39_RS17415 0.37 +0.5 4,397,913 - ABI39_RS17415 0.37 +0.6 4,397,921 + ABI39_RS17415 0.38 -0.2 4,397,964 - ABI39_RS17415 0.44 -0.7 4,398,017 + ABI39_RS17415 0.52 +0.6 4,398,020 - ABI39_RS17415 0.52 -1.5 4,398,022 + ABI39_RS17415 0.52 -0.3 4,398,022 + ABI39_RS17415 0.52 -0.2 4,398,031 - ABI39_RS17415 0.53 +0.5 4,398,032 + ABI39_RS17415 0.54 -0.1 4,398,033 - ABI39_RS17415 0.54 -0.2 4,398,086 - ABI39_RS17415 0.61 +0.9 4,398,090 + ABI39_RS17415 0.62 -0.4 4,398,091 - ABI39_RS17415 0.62 +0.0 4,398,145 + ABI39_RS17415 0.69 +0.2 4,398,210 - ABI39_RS17415 0.78 -0.1 4,398,212 - ABI39_RS17415 0.79 +0.2 4,398,249 - ABI39_RS17415 0.84 +0.5 4,398,293 - ABI39_RS17415 0.90 +0.1 4,398,399 + +0.5 4,398,404 + -0.4 4,398,405 - -0.4 4,398,405 - +0.3 4,398,553 - -4.5 4,398,608 + -2.9
Or see this region's nucleotide sequence