Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06060

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS06055 and ABI39_RS06060 are separated by 15 nucleotidesABI39_RS06060 and ABI39_RS06065 are separated by 6 nucleotides ABI39_RS06055: ABI39_RS06055 - phosphoribosylamine--glycine ligase, at 1,682,837 to 1,684,105 _RS06055 ABI39_RS06060: ABI39_RS06060 - S9 family peptidase, at 1,684,121 to 1,686,334 _RS06060 ABI39_RS06065: ABI39_RS06065 - RNA methyltransferase, at 1,686,341 to 1,687,789 _RS06065 Position (kb) 1684 1685 1686 1687Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1683.234 kb on - strand, within ABI39_RS06055at 1683.241 kb on - strand, within ABI39_RS06055at 1683.267 kb on - strand, within ABI39_RS06055at 1683.276 kb on - strand, within ABI39_RS06055at 1683.290 kb on - strand, within ABI39_RS06055at 1683.399 kb on - strand, within ABI39_RS06055at 1683.399 kb on - strand, within ABI39_RS06055at 1683.666 kb on - strand, within ABI39_RS06055at 1683.913 kb on + strand, within ABI39_RS06055at 1683.953 kb on - strand, within ABI39_RS06055at 1683.991 kb on + strandat 1683.992 kb on - strandat 1684.021 kb on - strandat 1684.162 kb on - strandat 1684.190 kb on - strandat 1684.193 kb on - strandat 1684.408 kb on - strand, within ABI39_RS06060at 1684.477 kb on - strand, within ABI39_RS06060at 1684.704 kb on + strand, within ABI39_RS06060at 1684.729 kb on - strand, within ABI39_RS06060at 1684.776 kb on + strand, within ABI39_RS06060at 1684.836 kb on + strand, within ABI39_RS06060at 1684.837 kb on - strand, within ABI39_RS06060at 1684.839 kb on - strand, within ABI39_RS06060at 1684.839 kb on - strand, within ABI39_RS06060at 1684.892 kb on - strand, within ABI39_RS06060at 1684.892 kb on - strand, within ABI39_RS06060at 1684.993 kb on + strand, within ABI39_RS06060at 1685.010 kb on + strand, within ABI39_RS06060at 1685.378 kb on + strand, within ABI39_RS06060at 1685.379 kb on - strand, within ABI39_RS06060at 1685.379 kb on - strand, within ABI39_RS06060at 1685.386 kb on + strand, within ABI39_RS06060at 1685.387 kb on - strand, within ABI39_RS06060at 1685.678 kb on + strand, within ABI39_RS06060at 1685.678 kb on + strand, within ABI39_RS06060at 1685.679 kb on - strand, within ABI39_RS06060at 1685.679 kb on - strand, within ABI39_RS06060at 1685.927 kb on - strand, within ABI39_RS06060at 1685.951 kb on + strand, within ABI39_RS06060at 1685.952 kb on - strand, within ABI39_RS06060at 1685.952 kb on - strand, within ABI39_RS06060at 1685.962 kb on + strand, within ABI39_RS06060at 1686.104 kb on - strand, within ABI39_RS06060at 1686.107 kb on + strand, within ABI39_RS06060at 1686.153 kb on - strandat 1686.219 kb on + strandat 1686.223 kb on - strandat 1686.285 kb on - strandat 1686.335 kb on - strandat 1686.335 kb on - strandat 1686.335 kb on - strandat 1686.774 kb on - strand, within ABI39_RS06065at 1686.860 kb on - strand, within ABI39_RS06065at 1687.326 kb on - strand, within ABI39_RS06065

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,683,234 - ABI39_RS06055 0.31 -5.8
1,683,241 - ABI39_RS06055 0.32 -4.0
1,683,267 - ABI39_RS06055 0.34 -4.5
1,683,276 - ABI39_RS06055 0.35 -4.8
1,683,290 - ABI39_RS06055 0.36 -3.5
1,683,399 - ABI39_RS06055 0.44 -3.0
1,683,399 - ABI39_RS06055 0.44 -3.9
1,683,666 - ABI39_RS06055 0.65 -5.3
1,683,913 + ABI39_RS06055 0.85 -1.5
1,683,953 - ABI39_RS06055 0.88 -3.2
1,683,991 + -2.0
1,683,992 - -5.6
1,684,021 - -3.3
1,684,162 - -0.8
1,684,190 - -0.4
1,684,193 - +0.3
1,684,408 - ABI39_RS06060 0.13 +0.1
1,684,477 - ABI39_RS06060 0.16 +0.1
1,684,704 + ABI39_RS06060 0.26 -3.0
1,684,729 - ABI39_RS06060 0.27 +0.0
1,684,776 + ABI39_RS06060 0.30 -1.7
1,684,836 + ABI39_RS06060 0.32 -1.5
1,684,837 - ABI39_RS06060 0.32 +0.0
1,684,839 - ABI39_RS06060 0.32 -0.6
1,684,839 - ABI39_RS06060 0.32 +0.2
1,684,892 - ABI39_RS06060 0.35 -0.1
1,684,892 - ABI39_RS06060 0.35 +0.0
1,684,993 + ABI39_RS06060 0.39 -0.5
1,685,010 + ABI39_RS06060 0.40 +0.3
1,685,378 + ABI39_RS06060 0.57 -1.0
1,685,379 - ABI39_RS06060 0.57 -1.7
1,685,379 - ABI39_RS06060 0.57 -2.0
1,685,386 + ABI39_RS06060 0.57 -0.3
1,685,387 - ABI39_RS06060 0.57 -3.0
1,685,678 + ABI39_RS06060 0.70 -3.6
1,685,678 + ABI39_RS06060 0.70 -2.3
1,685,679 - ABI39_RS06060 0.70 -3.0
1,685,679 - ABI39_RS06060 0.70 -3.9
1,685,927 - ABI39_RS06060 0.82 -3.5
1,685,951 + ABI39_RS06060 0.83 -2.9
1,685,952 - ABI39_RS06060 0.83 -2.5
1,685,952 - ABI39_RS06060 0.83 -2.9
1,685,962 + ABI39_RS06060 0.83 -1.3
1,686,104 - ABI39_RS06060 0.90 -2.4
1,686,107 + ABI39_RS06060 0.90 -2.0
1,686,153 - -2.5
1,686,219 + -1.4
1,686,223 - -2.3
1,686,285 - -3.5
1,686,335 - +0.1
1,686,335 - +0.2
1,686,335 - +0.0
1,686,774 - ABI39_RS06065 0.30 +0.1
1,686,860 - ABI39_RS06065 0.36 +0.0
1,687,326 - ABI39_RS06065 0.68 -1.7

Or see this region's nucleotide sequence