Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02960

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02955 and ABI39_RS02960 are separated by 271 nucleotidesABI39_RS02960 and ABI39_RS02965 are separated by 184 nucleotides ABI39_RS02955: ABI39_RS02955 - alkaline phosphatase, at 863,208 to 863,942 _RS02955 ABI39_RS02960: ABI39_RS02960 - pyrroline-5-carboxylate reductase, at 864,214 to 864,987 _RS02960 ABI39_RS02965: ABI39_RS02965 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 865,172 to 866,296 _RS02965 Position (kb) 864 865Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 863.241 kb on + strandat 863.268 kb on - strandat 863.271 kb on - strandat 863.284 kb on + strand, within ABI39_RS02955at 863.303 kb on + strand, within ABI39_RS02955at 863.311 kb on - strand, within ABI39_RS02955at 863.311 kb on - strand, within ABI39_RS02955at 863.311 kb on - strand, within ABI39_RS02955at 863.326 kb on + strand, within ABI39_RS02955at 863.335 kb on - strand, within ABI39_RS02955at 863.356 kb on + strand, within ABI39_RS02955at 863.356 kb on + strand, within ABI39_RS02955at 863.388 kb on + strand, within ABI39_RS02955at 863.447 kb on - strand, within ABI39_RS02955at 863.525 kb on + strand, within ABI39_RS02955at 863.526 kb on - strand, within ABI39_RS02955at 863.558 kb on - strand, within ABI39_RS02955at 863.568 kb on + strand, within ABI39_RS02955at 863.568 kb on + strand, within ABI39_RS02955at 863.569 kb on - strand, within ABI39_RS02955at 863.620 kb on - strand, within ABI39_RS02955at 863.621 kb on + strand, within ABI39_RS02955at 863.635 kb on - strand, within ABI39_RS02955at 863.678 kb on + strand, within ABI39_RS02955at 863.715 kb on - strand, within ABI39_RS02955at 863.753 kb on + strand, within ABI39_RS02955at 863.768 kb on + strand, within ABI39_RS02955at 863.771 kb on - strand, within ABI39_RS02955at 863.825 kb on + strand, within ABI39_RS02955at 863.827 kb on + strand, within ABI39_RS02955at 863.916 kb on + strandat 863.964 kb on - strandat 863.966 kb on - strandat 864.035 kb on - strandat 864.035 kb on - strandat 864.044 kb on - strandat 864.175 kb on - strandat 864.208 kb on + strandat 864.208 kb on + strandat 864.309 kb on + strand, within ABI39_RS02960at 864.318 kb on + strand, within ABI39_RS02960at 864.318 kb on + strand, within ABI39_RS02960at 864.318 kb on + strand, within ABI39_RS02960at 864.322 kb on + strand, within ABI39_RS02960at 864.342 kb on + strand, within ABI39_RS02960at 864.429 kb on + strand, within ABI39_RS02960at 864.441 kb on + strand, within ABI39_RS02960at 864.455 kb on + strand, within ABI39_RS02960at 864.467 kb on + strand, within ABI39_RS02960at 864.468 kb on - strand, within ABI39_RS02960at 864.546 kb on + strand, within ABI39_RS02960at 864.610 kb on - strand, within ABI39_RS02960at 864.627 kb on + strand, within ABI39_RS02960at 864.654 kb on + strand, within ABI39_RS02960at 864.755 kb on - strand, within ABI39_RS02960at 864.809 kb on - strand, within ABI39_RS02960at 864.832 kb on + strand, within ABI39_RS02960at 864.898 kb on + strand, within ABI39_RS02960at 864.958 kb on - strandat 865.007 kb on - strandat 865.007 kb on - strandat 865.009 kb on - strandat 865.012 kb on + strandat 865.143 kb on + strandat 865.259 kb on - strandat 865.280 kb on + strandat 865.280 kb on + strandat 865.416 kb on - strand, within ABI39_RS02965at 865.524 kb on + strand, within ABI39_RS02965at 865.601 kb on + strand, within ABI39_RS02965at 865.667 kb on + strand, within ABI39_RS02965at 865.712 kb on - strand, within ABI39_RS02965at 865.768 kb on + strand, within ABI39_RS02965at 865.827 kb on - strand, within ABI39_RS02965at 865.846 kb on - strand, within ABI39_RS02965at 865.880 kb on - strand, within ABI39_RS02965

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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863,241 + +0.1
863,268 - +0.0
863,271 - +0.1
863,284 + ABI39_RS02955 0.10 +0.1
863,303 + ABI39_RS02955 0.13 +0.2
863,311 - ABI39_RS02955 0.14 +0.1
863,311 - ABI39_RS02955 0.14 +0.6
863,311 - ABI39_RS02955 0.14 -0.1
863,326 + ABI39_RS02955 0.16 -0.1
863,335 - ABI39_RS02955 0.17 +0.0
863,356 + ABI39_RS02955 0.20 -0.1
863,356 + ABI39_RS02955 0.20 -0.1
863,388 + ABI39_RS02955 0.24 -0.9
863,447 - ABI39_RS02955 0.33 -0.0
863,525 + ABI39_RS02955 0.43 -0.1
863,526 - ABI39_RS02955 0.43 +0.2
863,558 - ABI39_RS02955 0.48 +0.3
863,568 + ABI39_RS02955 0.49 +0.3
863,568 + ABI39_RS02955 0.49 +0.4
863,569 - ABI39_RS02955 0.49 -0.4
863,620 - ABI39_RS02955 0.56 -0.2
863,621 + ABI39_RS02955 0.56 -0.1
863,635 - ABI39_RS02955 0.58 -0.4
863,678 + ABI39_RS02955 0.64 +0.3
863,715 - ABI39_RS02955 0.69 -0.5
863,753 + ABI39_RS02955 0.74 +0.7
863,768 + ABI39_RS02955 0.76 -0.0
863,771 - ABI39_RS02955 0.77 +0.0
863,825 + ABI39_RS02955 0.84 -1.1
863,827 + ABI39_RS02955 0.84 +0.3
863,916 + -0.3
863,964 - +0.4
863,966 - +0.1
864,035 - -0.1
864,035 - -0.1
864,044 - -0.1
864,175 - -0.7
864,208 + +0.3
864,208 + -0.2
864,309 + ABI39_RS02960 0.12 -4.3
864,318 + ABI39_RS02960 0.13 -6.0
864,318 + ABI39_RS02960 0.13 -5.7
864,318 + ABI39_RS02960 0.13 -3.3
864,322 + ABI39_RS02960 0.14 -3.4
864,342 + ABI39_RS02960 0.17 -5.2
864,429 + ABI39_RS02960 0.28 -5.3
864,441 + ABI39_RS02960 0.29 -4.1
864,455 + ABI39_RS02960 0.31 -4.5
864,467 + ABI39_RS02960 0.33 -4.7
864,468 - ABI39_RS02960 0.33 -4.5
864,546 + ABI39_RS02960 0.43 -3.7
864,610 - ABI39_RS02960 0.51 -3.7
864,627 + ABI39_RS02960 0.53 -4.3
864,654 + ABI39_RS02960 0.57 -3.0
864,755 - ABI39_RS02960 0.70 -4.0
864,809 - ABI39_RS02960 0.77 -6.1
864,832 + ABI39_RS02960 0.80 -3.7
864,898 + ABI39_RS02960 0.88 -5.9
864,958 - -5.1
865,007 - +0.2
865,007 - -0.2
865,009 - -0.2
865,012 + -4.2
865,143 + -0.3
865,259 - -3.6
865,280 + -3.3
865,280 + -2.7
865,416 - ABI39_RS02965 0.22 -2.9
865,524 + ABI39_RS02965 0.31 -2.1
865,601 + ABI39_RS02965 0.38 -4.3
865,667 + ABI39_RS02965 0.44 -2.8
865,712 - ABI39_RS02965 0.48 -2.8
865,768 + ABI39_RS02965 0.53 -2.4
865,827 - ABI39_RS02965 0.58 -3.2
865,846 - ABI39_RS02965 0.60 -3.5
865,880 - ABI39_RS02965 0.63 -3.4

Or see this region's nucleotide sequence