Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS02875

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS02870 and ABI39_RS02875 are separated by 19 nucleotidesABI39_RS02875 and ABI39_RS02880 are separated by 37 nucleotides ABI39_RS02870: ABI39_RS02870 - acetylornithine carbamoyltransferase, at 830,694 to 831,659 _RS02870 ABI39_RS02875: ABI39_RS02875 - glutamate-5-semialdehyde dehydrogenase, at 831,679 to 832,932 _RS02875 ABI39_RS02880: ABI39_RS02880 - glutamate 5-kinase, at 832,970 to 834,052 _RS02880 Position (kb) 831 832 833Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 830.964 kb on - strand, within ABI39_RS02870at 830.964 kb on - strand, within ABI39_RS02870at 831.041 kb on - strand, within ABI39_RS02870at 831.263 kb on - strand, within ABI39_RS02870at 831.295 kb on + strand, within ABI39_RS02870at 831.296 kb on - strand, within ABI39_RS02870at 831.459 kb on + strand, within ABI39_RS02870at 831.482 kb on + strand, within ABI39_RS02870at 831.647 kb on + strandat 831.652 kb on + strandat 831.652 kb on + strandat 831.673 kb on - strandat 831.675 kb on - strandat 831.677 kb on + strandat 831.688 kb on + strandat 831.708 kb on + strandat 831.778 kb on - strandat 831.782 kb on - strandat 831.839 kb on + strand, within ABI39_RS02875at 831.912 kb on + strand, within ABI39_RS02875at 831.926 kb on + strand, within ABI39_RS02875at 831.964 kb on - strand, within ABI39_RS02875at 832.085 kb on + strand, within ABI39_RS02875at 832.153 kb on + strand, within ABI39_RS02875at 832.313 kb on + strand, within ABI39_RS02875at 832.313 kb on + strand, within ABI39_RS02875at 832.344 kb on + strand, within ABI39_RS02875at 832.421 kb on + strand, within ABI39_RS02875at 832.477 kb on - strand, within ABI39_RS02875at 832.510 kb on + strand, within ABI39_RS02875at 832.515 kb on + strand, within ABI39_RS02875at 832.612 kb on + strand, within ABI39_RS02875at 832.709 kb on - strand, within ABI39_RS02875at 832.709 kb on - strand, within ABI39_RS02875at 832.959 kb on - strandat 832.986 kb on + strandat 832.987 kb on - strandat 832.987 kb on - strandat 832.997 kb on + strandat 832.998 kb on - strandat 833.094 kb on - strand, within ABI39_RS02880at 833.132 kb on + strand, within ABI39_RS02880at 833.170 kb on + strand, within ABI39_RS02880at 833.357 kb on + strand, within ABI39_RS02880at 833.357 kb on + strand, within ABI39_RS02880at 833.526 kb on + strand, within ABI39_RS02880at 833.526 kb on + strand, within ABI39_RS02880at 833.527 kb on - strand, within ABI39_RS02880at 833.527 kb on - strand, within ABI39_RS02880at 833.611 kb on + strand, within ABI39_RS02880at 833.660 kb on + strand, within ABI39_RS02880at 833.660 kb on + strand, within ABI39_RS02880at 833.765 kb on - strand, within ABI39_RS02880

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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830,964 - ABI39_RS02870 0.28 -5.1
830,964 - ABI39_RS02870 0.28 -4.0
831,041 - ABI39_RS02870 0.36 -4.4
831,263 - ABI39_RS02870 0.59 -4.6
831,295 + ABI39_RS02870 0.62 -3.7
831,296 - ABI39_RS02870 0.62 -2.0
831,459 + ABI39_RS02870 0.79 -4.0
831,482 + ABI39_RS02870 0.82 -5.8
831,647 + -4.0
831,652 + -3.6
831,652 + -3.6
831,673 - -0.4
831,675 - -0.3
831,677 + -4.3
831,688 + -5.1
831,708 + -6.5
831,778 - -5.2
831,782 - -4.8
831,839 + ABI39_RS02875 0.13 -6.2
831,912 + ABI39_RS02875 0.19 -5.1
831,926 + ABI39_RS02875 0.20 -4.6
831,964 - ABI39_RS02875 0.23 -5.4
832,085 + ABI39_RS02875 0.32 -4.4
832,153 + ABI39_RS02875 0.38 -4.0
832,313 + ABI39_RS02875 0.51 -5.5
832,313 + ABI39_RS02875 0.51 -5.3
832,344 + ABI39_RS02875 0.53 -3.4
832,421 + ABI39_RS02875 0.59 -2.8
832,477 - ABI39_RS02875 0.64 -4.7
832,510 + ABI39_RS02875 0.66 -5.8
832,515 + ABI39_RS02875 0.67 -4.2
832,612 + ABI39_RS02875 0.74 -3.7
832,709 - ABI39_RS02875 0.82 -3.6
832,709 - ABI39_RS02875 0.82 -4.0
832,959 - -0.0
832,986 + -4.9
832,987 - -5.3
832,987 - -4.0
832,997 + -4.7
832,998 - -3.7
833,094 - ABI39_RS02880 0.11 -5.2
833,132 + ABI39_RS02880 0.15 -5.1
833,170 + ABI39_RS02880 0.18 -5.1
833,357 + ABI39_RS02880 0.36 -5.0
833,357 + ABI39_RS02880 0.36 -3.0
833,526 + ABI39_RS02880 0.51 -2.5
833,526 + ABI39_RS02880 0.51 -4.4
833,527 - ABI39_RS02880 0.51 -6.6
833,527 - ABI39_RS02880 0.51 -5.0
833,611 + ABI39_RS02880 0.59 -3.7
833,660 + ABI39_RS02880 0.64 -5.1
833,660 + ABI39_RS02880 0.64 -3.7
833,765 - ABI39_RS02880 0.73 -6.2

Or see this region's nucleotide sequence