Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02860 and ABI39_RS02865 are separated by 29 nucleotides ABI39_RS02865 and ABI39_RS02870 are separated by 385 nucleotides ABI39_RS02870 and ABI39_RS02875 are separated by 19 nucleotides
ABI39_RS02860: ABI39_RS02860 - NigD-like N-terminal domain-containing protein, at 829,230 to 829,880
_RS02860
ABI39_RS02865: ABI39_RS02865 - rhodanese-like domain-containing protein, at 829,910 to 830,308
_RS02865
ABI39_RS02870: ABI39_RS02870 - acetylornithine carbamoyltransferase, at 830,694 to 831,659
_RS02870
ABI39_RS02875: ABI39_RS02875 - glutamate-5-semialdehyde dehydrogenase, at 831,679 to 832,932
_RS02875
Position (kb) 830
831
832 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 829.711 kb on - strand, within ABI39_RS02860 at 829.842 kb on + strand at 830.061 kb on + strand, within ABI39_RS02865 at 830.184 kb on - strand, within ABI39_RS02865 at 830.249 kb on + strand, within ABI39_RS02865 at 830.250 kb on - strand, within ABI39_RS02865 at 830.334 kb on + strand at 830.412 kb on - strand at 830.498 kb on + strand at 830.547 kb on - strand at 830.964 kb on - strand, within ABI39_RS02870 at 830.964 kb on - strand, within ABI39_RS02870 at 831.041 kb on - strand, within ABI39_RS02870 at 831.263 kb on - strand, within ABI39_RS02870 at 831.295 kb on + strand, within ABI39_RS02870 at 831.296 kb on - strand, within ABI39_RS02870 at 831.459 kb on + strand, within ABI39_RS02870 at 831.482 kb on + strand, within ABI39_RS02870 at 831.647 kb on + strand at 831.652 kb on + strand at 831.652 kb on + strand at 831.673 kb on - strand at 831.675 kb on - strand at 831.677 kb on + strand at 831.688 kb on + strand at 831.708 kb on + strand at 831.778 kb on - strand at 831.782 kb on - strand at 831.839 kb on + strand, within ABI39_RS02875 at 831.912 kb on + strand, within ABI39_RS02875 at 831.926 kb on + strand, within ABI39_RS02875 at 831.964 kb on - strand, within ABI39_RS02875 at 832.085 kb on + strand, within ABI39_RS02875 at 832.153 kb on + strand, within ABI39_RS02875 at 832.313 kb on + strand, within ABI39_RS02875 at 832.313 kb on + strand, within ABI39_RS02875 at 832.344 kb on + strand, within ABI39_RS02875 at 832.421 kb on + strand, within ABI39_RS02875 at 832.477 kb on - strand, within ABI39_RS02875 at 832.510 kb on + strand, within ABI39_RS02875 at 832.515 kb on + strand, within ABI39_RS02875 at 832.612 kb on + strand, within ABI39_RS02875
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 829,711 - ABI39_RS02860 0.74 +0.5 829,842 + +0.1 830,061 + ABI39_RS02865 0.38 +0.1 830,184 - ABI39_RS02865 0.69 -0.2 830,249 + ABI39_RS02865 0.85 +0.5 830,250 - ABI39_RS02865 0.85 +0.2 830,334 + -0.2 830,412 - +0.1 830,498 + +0.3 830,547 - -0.2 830,964 - ABI39_RS02870 0.28 -5.1 830,964 - ABI39_RS02870 0.28 -4.0 831,041 - ABI39_RS02870 0.36 -4.4 831,263 - ABI39_RS02870 0.59 -4.6 831,295 + ABI39_RS02870 0.62 -3.7 831,296 - ABI39_RS02870 0.62 -2.0 831,459 + ABI39_RS02870 0.79 -4.0 831,482 + ABI39_RS02870 0.82 -5.8 831,647 + -4.0 831,652 + -3.6 831,652 + -3.6 831,673 - -0.4 831,675 - -0.3 831,677 + -4.3 831,688 + -5.1 831,708 + -6.5 831,778 - -5.2 831,782 - -4.8 831,839 + ABI39_RS02875 0.13 -6.2 831,912 + ABI39_RS02875 0.19 -5.1 831,926 + ABI39_RS02875 0.20 -4.6 831,964 - ABI39_RS02875 0.23 -5.4 832,085 + ABI39_RS02875 0.32 -4.4 832,153 + ABI39_RS02875 0.38 -4.0 832,313 + ABI39_RS02875 0.51 -5.5 832,313 + ABI39_RS02875 0.51 -5.3 832,344 + ABI39_RS02875 0.53 -3.4 832,421 + ABI39_RS02875 0.59 -2.8 832,477 - ABI39_RS02875 0.64 -4.7 832,510 + ABI39_RS02875 0.66 -5.8 832,515 + ABI39_RS02875 0.67 -4.2 832,612 + ABI39_RS02875 0.74 -3.7
Or see this region's nucleotide sequence