Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS22275 and ABI39_RS16005 are separated by 12 nucleotides ABI39_RS16005 and ABI39_RS16010 overlap by 11 nucleotides ABI39_RS16010 and ABI39_RS22820 are separated by 12 nucleotides ABI39_RS22820 and ABI39_RS16020 are separated by 439 nucleotides
ABI39_RS22275: ABI39_RS22275 - hypothetical protein, at 4,098,927 to 4,104,386
_RS22275
ABI39_RS16005: ABI39_RS16005 - hypothetical protein, at 4,104,399 to 4,104,692
_RS16005
ABI39_RS16010: ABI39_RS16010 - hypothetical protein, at 4,104,682 to 4,104,906
_RS16010
ABI39_RS22820: ABI39_RS22820 - hypothetical protein, at 4,104,919 to 4,105,203
_RS22820
ABI39_RS16020: ABI39_RS16020 - hypothetical protein, at 4,105,643 to 4,106,023
_RS16020
Position (kb) 4104
4105
4106 Strain fitness (log2 ratio) -1
0
1 at 4103.923 kb on + strand at 4103.924 kb on - strand at 4104.018 kb on + strand at 4104.061 kb on - strand at 4104.170 kb on + strand at 4104.218 kb on - strand at 4104.299 kb on - strand at 4104.330 kb on + strand at 4104.331 kb on - strand at 4104.347 kb on + strand at 4104.348 kb on - strand at 4104.392 kb on - strand at 4104.429 kb on + strand, within ABI39_RS16005 at 4104.440 kb on - strand, within ABI39_RS16005 at 4104.474 kb on + strand, within ABI39_RS16005 at 4104.476 kb on + strand, within ABI39_RS16005 at 4104.476 kb on + strand, within ABI39_RS16005 at 4104.476 kb on + strand, within ABI39_RS16005 at 4104.496 kb on - strand, within ABI39_RS16005 at 4104.498 kb on - strand, within ABI39_RS16005 at 4104.662 kb on + strand, within ABI39_RS16005 at 4104.772 kb on + strand, within ABI39_RS16010 at 4104.772 kb on + strand, within ABI39_RS16010 at 4104.773 kb on - strand, within ABI39_RS16010 at 4104.916 kb on - strand at 4104.989 kb on + strand, within ABI39_RS22820 at 4105.282 kb on - strand at 4105.282 kb on - strand at 4105.346 kb on - strand at 4105.347 kb on + strand at 4105.348 kb on - strand at 4105.348 kb on - strand at 4105.351 kb on + strand at 4105.351 kb on + strand at 4105.433 kb on - strand at 4105.637 kb on + strand at 4105.649 kb on + strand at 4105.700 kb on + strand, within ABI39_RS16020 at 4105.701 kb on - strand, within ABI39_RS16020 at 4105.701 kb on - strand, within ABI39_RS16020 at 4105.754 kb on - strand, within ABI39_RS16020 at 4105.754 kb on - strand, within ABI39_RS16020 at 4105.757 kb on + strand, within ABI39_RS16020 at 4105.758 kb on - strand, within ABI39_RS16020 at 4105.772 kb on + strand, within ABI39_RS16020 at 4105.784 kb on - strand, within ABI39_RS16020 at 4105.784 kb on - strand, within ABI39_RS16020 at 4105.856 kb on + strand, within ABI39_RS16020 at 4105.878 kb on - strand, within ABI39_RS16020 at 4105.922 kb on + strand, within ABI39_RS16020 at 4106.044 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,103,923 + -0.7 4,103,924 - +0.1 4,104,018 + +0.3 4,104,061 - -0.3 4,104,170 + -0.5 4,104,218 - -0.1 4,104,299 - -0.3 4,104,330 + -1.4 4,104,331 - +1.4 4,104,347 + +0.3 4,104,348 - +0.5 4,104,392 - -0.4 4,104,429 + ABI39_RS16005 0.10 +0.3 4,104,440 - ABI39_RS16005 0.14 +0.3 4,104,474 + ABI39_RS16005 0.26 +0.2 4,104,476 + ABI39_RS16005 0.26 +0.3 4,104,476 + ABI39_RS16005 0.26 +0.5 4,104,476 + ABI39_RS16005 0.26 +0.1 4,104,496 - ABI39_RS16005 0.33 +0.1 4,104,498 - ABI39_RS16005 0.34 -0.2 4,104,662 + ABI39_RS16005 0.89 +0.1 4,104,772 + ABI39_RS16010 0.40 -0.7 4,104,772 + ABI39_RS16010 0.40 -0.3 4,104,773 - ABI39_RS16010 0.40 -0.6 4,104,916 - +0.1 4,104,989 + ABI39_RS22820 0.25 -0.8 4,105,282 - -0.0 4,105,282 - +0.6 4,105,346 - -0.1 4,105,347 + -0.2 4,105,348 - +0.1 4,105,348 - +0.6 4,105,351 + -0.1 4,105,351 + -0.5 4,105,433 - +0.1 4,105,637 + -0.1 4,105,649 + +0.1 4,105,700 + ABI39_RS16020 0.15 +0.4 4,105,701 - ABI39_RS16020 0.15 +0.4 4,105,701 - ABI39_RS16020 0.15 -0.4 4,105,754 - ABI39_RS16020 0.29 -0.1 4,105,754 - ABI39_RS16020 0.29 +1.5 4,105,757 + ABI39_RS16020 0.30 +0.1 4,105,758 - ABI39_RS16020 0.30 -0.8 4,105,772 + ABI39_RS16020 0.34 +1.1 4,105,784 - ABI39_RS16020 0.37 +0.2 4,105,784 - ABI39_RS16020 0.37 -0.6 4,105,856 + ABI39_RS16020 0.56 -0.0 4,105,878 - ABI39_RS16020 0.62 -0.2 4,105,922 + ABI39_RS16020 0.73 -1.2 4,106,044 + +0.0
Or see this region's nucleotide sequence