Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS18620 and ABI39_RS18630 overlap by 4 nucleotides ABI39_RS18630 and ABI39_RS18635 overlap by 30 nucleotides ABI39_RS18635 and ABI39_RS18645 are separated by 392 nucleotides ABI39_RS18645 and ABI39_RS18650 are separated by 326 nucleotides
ABI39_RS18620: ABI39_RS18620 - IS21 family transposase, at 4,696,772 to 4,698,348
_RS18620
ABI39_RS18630: ABI39_RS18630 - IS21-like element helper ATPase IstB, at 4,698,345 to 4,699,117
_RS18630
ABI39_RS18635: ABI39_RS18635 - DUF4373 domain-containing protein, at 4,699,088 to 4,699,819
_RS18635
ABI39_RS18645: ABI39_RS18645 - hypothetical protein, at 4,700,212 to 4,700,484
_RS18645
ABI39_RS18650: ABI39_RS18650 - RNA methyltransferase, at 4,700,811 to 4,701,617
_RS18650
Position (kb) 4699
4700 Strain fitness (log2 ratio) -1
0
1 at 4698.188 kb on + strand, within ABI39_RS18620 at 4698.190 kb on + strand, within ABI39_RS18620 at 4698.394 kb on - strand at 4698.645 kb on + strand, within ABI39_RS18630 at 4698.645 kb on + strand, within ABI39_RS18630 at 4698.785 kb on + strand, within ABI39_RS18630 at 4698.845 kb on - strand, within ABI39_RS18630 at 4699.051 kb on + strand at 4699.051 kb on + strand at 4699.090 kb on - strand at 4699.116 kb on - strand at 4699.135 kb on + strand at 4699.135 kb on + strand at 4699.197 kb on + strand, within ABI39_RS18635 at 4699.292 kb on - strand, within ABI39_RS18635 at 4699.297 kb on - strand, within ABI39_RS18635 at 4699.362 kb on - strand, within ABI39_RS18635 at 4699.460 kb on + strand, within ABI39_RS18635 at 4699.462 kb on + strand, within ABI39_RS18635 at 4699.462 kb on + strand, within ABI39_RS18635 at 4699.463 kb on - strand, within ABI39_RS18635 at 4699.473 kb on - strand, within ABI39_RS18635 at 4699.651 kb on - strand, within ABI39_RS18635 at 4699.737 kb on + strand, within ABI39_RS18635 at 4699.801 kb on + strand at 4699.819 kb on + strand at 4699.820 kb on - strand at 4699.821 kb on + strand at 4699.823 kb on + strand at 4699.823 kb on + strand at 4699.824 kb on - strand at 4699.832 kb on + strand at 4699.854 kb on + strand at 4699.907 kb on - strand at 4700.009 kb on - strand at 4700.220 kb on + strand at 4700.235 kb on + strand at 4700.267 kb on + strand, within ABI39_RS18645 at 4700.305 kb on + strand, within ABI39_RS18645 at 4700.305 kb on + strand, within ABI39_RS18645 at 4700.352 kb on + strand, within ABI39_RS18645 at 4700.363 kb on - strand, within ABI39_RS18645 at 4700.363 kb on - strand, within ABI39_RS18645 at 4700.363 kb on - strand, within ABI39_RS18645 at 4700.444 kb on - strand, within ABI39_RS18645 at 4700.444 kb on - strand, within ABI39_RS18645 at 4700.509 kb on - strand at 4700.531 kb on - strand at 4700.563 kb on + strand at 4700.636 kb on + strand at 4700.637 kb on - strand at 4700.661 kb on - strand at 4700.667 kb on + strand at 4700.667 kb on + strand at 4700.762 kb on - strand at 4700.802 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 4,698,188 + ABI39_RS18620 0.90 -0.1 4,698,190 + ABI39_RS18620 0.90 +0.3 4,698,394 - -0.4 4,698,645 + ABI39_RS18630 0.39 -0.2 4,698,645 + ABI39_RS18630 0.39 +1.0 4,698,785 + ABI39_RS18630 0.57 -0.2 4,698,845 - ABI39_RS18630 0.65 -0.5 4,699,051 + -0.1 4,699,051 + +0.1 4,699,090 - +0.2 4,699,116 - +0.0 4,699,135 + +1.1 4,699,135 + -0.7 4,699,197 + ABI39_RS18635 0.15 +0.9 4,699,292 - ABI39_RS18635 0.28 +0.3 4,699,297 - ABI39_RS18635 0.29 +0.4 4,699,362 - ABI39_RS18635 0.37 +0.4 4,699,460 + ABI39_RS18635 0.51 +0.3 4,699,462 + ABI39_RS18635 0.51 +0.4 4,699,462 + ABI39_RS18635 0.51 +0.3 4,699,463 - ABI39_RS18635 0.51 +0.4 4,699,473 - ABI39_RS18635 0.53 +0.3 4,699,651 - ABI39_RS18635 0.77 -1.0 4,699,737 + ABI39_RS18635 0.89 +0.5 4,699,801 + +0.4 4,699,819 + +1.3 4,699,820 - -0.3 4,699,821 + -0.4 4,699,823 + -0.0 4,699,823 + +0.1 4,699,824 - +0.9 4,699,832 + +0.2 4,699,854 + -0.2 4,699,907 - -0.1 4,700,009 - -0.2 4,700,220 + -0.3 4,700,235 + +0.9 4,700,267 + ABI39_RS18645 0.20 -1.4 4,700,305 + ABI39_RS18645 0.34 +0.2 4,700,305 + ABI39_RS18645 0.34 +0.0 4,700,352 + ABI39_RS18645 0.51 -0.3 4,700,363 - ABI39_RS18645 0.55 +0.4 4,700,363 - ABI39_RS18645 0.55 +0.3 4,700,363 - ABI39_RS18645 0.55 -0.5 4,700,444 - ABI39_RS18645 0.85 -0.6 4,700,444 - ABI39_RS18645 0.85 +0.6 4,700,509 - +0.1 4,700,531 - +0.5 4,700,563 + +0.9 4,700,636 + +0.1 4,700,637 - +0.4 4,700,661 - +0.7 4,700,667 + +1.5 4,700,667 + +0.4 4,700,762 - +0.2 4,700,802 - +0.1
Or see this region's nucleotide sequence