Strain Fitness in Escherichia coli ECOR38 around HEPCGN_15940

Experiment: Bas48

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas48
1,960,923	-	aroB	HEPCGN_15935	0.26	-2.3
1,960,925	+	aroB	HEPCGN_15935	0.27	-1.3
1,960,925	+	aroB	HEPCGN_15935	0.27	+0.4
1,960,926	-	aroB	HEPCGN_15935	0.27	+2.3
1,960,926	-	aroB	HEPCGN_15935	0.27	-0.9
1,961,106	+	aroB	HEPCGN_15935	0.43	-0.7
1,961,107	-	aroB	HEPCGN_15935	0.43	-0.3
1,961,283	+	aroB	HEPCGN_15935	0.60	+0.5
1,961,510	+	aroB	HEPCGN_15935	0.80	-1.9
1,961,511	-	aroB	HEPCGN_15935	0.80	+0.7
1,961,513	+	aroB	HEPCGN_15935	0.81	-2.4
1,961,513	+	aroB	HEPCGN_15935	0.81	-2.2
1,961,514	-	aroB	HEPCGN_15935	0.81	-0.3
1,961,516	-	aroB	HEPCGN_15935	0.81	+0.3
1,961,577	+	aroB	HEPCGN_15935	0.87	-0.6
1,961,588	+	aroB	HEPCGN_15935	0.88	-1.9
1,961,588	+	aroB	HEPCGN_15935	0.88	-0.0
1,961,629	+				-0.5
1,961,651	+				-0.4
1,961,651	+				-3.5
1,961,722	-				-0.4
1,961,758	+				-1.8
1,961,758	+				-0.0
1,961,761	+				-0.8
1,961,786	+				-0.9
1,961,802	-				-1.5
1,961,908	-				-0.0
1,962,121	+	damX	HEPCGN_15940	0.24	+0.1
1,962,122	-	damX	HEPCGN_15940	0.24	-0.5
1,962,123	+	damX	HEPCGN_15940	0.24	+0.3
1,962,123	+	damX	HEPCGN_15940	0.24	-0.0
1,962,124	-	damX	HEPCGN_15940	0.24	-1.2
1,962,124	-	damX	HEPCGN_15940	0.24	-0.4
1,962,124	-	damX	HEPCGN_15940	0.24	-1.6
1,962,459	+	damX	HEPCGN_15940	0.50	+0.3
1,962,460	-	damX	HEPCGN_15940	0.50	-0.0
1,962,758	+	damX	HEPCGN_15940	0.73	-1.1
1,962,819	+	damX	HEPCGN_15940	0.78	-0.5
1,962,819	+	damX	HEPCGN_15940	0.78	-0.0
1,962,886	+	damX	HEPCGN_15940	0.83	-0.0
1,962,887	-	damX	HEPCGN_15940	0.83	-2.3
1,962,931	+	damX	HEPCGN_15940	0.87	-1.9
1,962,970	+	damX	HEPCGN_15940	0.90	-0.2
1,962,970	+	damX	HEPCGN_15940	0.90	+0.3
1,962,970	+	damX	HEPCGN_15940	0.90	-0.5
1,963,027	-				+2.3
1,963,082	+				-0.4
1,963,099	+				-0.7
1,963,099	+				-0.4
1,963,099	+				-0.0
1,963,127	-				+2.3
1,963,193	-				+0.3
1,963,193	-				-1.6
1,963,196	+				+0.9
1,963,197	-				-1.6
1,963,197	-				+0.3
1,963,197	-				+0.3
1,963,251	-				+1.3
1,963,271	-				-0.0
1,963,314	+	dam	HEPCGN_15945	0.13	+2.3
1,963,315	-	dam	HEPCGN_15945	0.13	+0.7
1,963,355	+	dam	HEPCGN_15945	0.18	+0.5
1,963,356	-	dam	HEPCGN_15945	0.18	-0.7
1,963,424	+	dam	HEPCGN_15945	0.26	+1.3
1,963,428	+	dam	HEPCGN_15945	0.26	+1.3
1,963,429	-	dam	HEPCGN_15945	0.26	+1.3
1,963,478	+	dam	HEPCGN_15945	0.32	+0.3
1,963,581	-	dam	HEPCGN_15945	0.45	+2.3
1,963,688	+	dam	HEPCGN_15945	0.57	+1.3
1,963,742	+	dam	HEPCGN_15945	0.64	+1.3
1,963,957	+	dam	HEPCGN_15945	0.89	+2.3
1,963,960	-	dam	HEPCGN_15945	0.90	+0.3
1,963,981	+				-1.0