Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cynX and cynS are separated by 5 nucleotides cynS and cynT are separated by 30 nucleotides cynT and cynR are separated by 109 nucleotides
HEPCGN_07440: cynX - cyanate transporter CynX, at 224,718 to 225,899
cynX
HEPCGN_07445: cynS - cyanase, at 225,905 to 226,375
cynS
HEPCGN_07450: cynT - carbonic anhydrase CynT, at 226,406 to 227,065
cynT
HEPCGN_07455: cynR - transcriptional regulator CynR, at 227,175 to 228,074
cynR
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1
2 at 225.426 kb on - strand, within cynX at 225.596 kb on + strand, within cynX at 225.654 kb on + strand, within cynX at 225.842 kb on + strand at 225.894 kb on - strand at 225.894 kb on - strand at 225.927 kb on + strand at 225.931 kb on + strand at 225.931 kb on + strand at 225.938 kb on + strand at 225.938 kb on + strand at 225.938 kb on + strand at 225.938 kb on + strand at 225.939 kb on - strand at 225.986 kb on - strand, within cynS at 226.003 kb on + strand, within cynS at 226.016 kb on - strand, within cynS at 226.065 kb on + strand, within cynS at 226.066 kb on - strand, within cynS at 226.083 kb on + strand, within cynS at 226.084 kb on - strand, within cynS at 226.157 kb on + strand, within cynS at 226.157 kb on + strand, within cynS at 226.158 kb on - strand, within cynS at 226.349 kb on - strand at 226.591 kb on + strand, within cynT at 226.720 kb on + strand, within cynT at 226.721 kb on - strand, within cynT at 226.957 kb on + strand, within cynT at 226.997 kb on - strand, within cynT at 227.189 kb on + strand at 227.189 kb on + strand at 227.189 kb on + strand at 227.189 kb on + strand at 227.190 kb on - strand at 227.190 kb on - strand at 227.290 kb on + strand, within cynR at 227.303 kb on - strand, within cynR at 227.373 kb on + strand, within cynR at 227.478 kb on - strand, within cynR at 227.669 kb on - strand, within cynR at 227.675 kb on - strand, within cynR at 227.794 kb on - strand, within cynR at 227.813 kb on - strand, within cynR at 227.991 kb on - strand at 228.023 kb on - strand at 228.039 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 225,426 - cynX HEPCGN_07440 0.60 -0.6 225,596 + cynX HEPCGN_07440 0.74 -0.6 225,654 + cynX HEPCGN_07440 0.79 -0.2 225,842 + -0.3 225,894 - +0.1 225,894 - -0.8 225,927 + -1.9 225,931 + +1.3 225,931 + +0.1 225,938 + -0.9 225,938 + +0.8 225,938 + +1.2 225,938 + -0.9 225,939 - +0.1 225,986 - cynS HEPCGN_07445 0.17 -0.4 226,003 + cynS HEPCGN_07445 0.21 -1.0 226,016 - cynS HEPCGN_07445 0.24 -1.0 226,065 + cynS HEPCGN_07445 0.34 +0.1 226,066 - cynS HEPCGN_07445 0.34 -0.2 226,083 + cynS HEPCGN_07445 0.38 +1.0 226,084 - cynS HEPCGN_07445 0.38 -0.0 226,157 + cynS HEPCGN_07445 0.54 +0.4 226,157 + cynS HEPCGN_07445 0.54 +1.4 226,158 - cynS HEPCGN_07445 0.54 +1.3 226,349 - +0.3 226,591 + cynT HEPCGN_07450 0.28 -1.5 226,720 + cynT HEPCGN_07450 0.48 +1.2 226,721 - cynT HEPCGN_07450 0.48 -0.0 226,957 + cynT HEPCGN_07450 0.83 +0.8 226,997 - cynT HEPCGN_07450 0.90 +2.2 227,189 + +0.5 227,189 + +0.4 227,189 + -0.0 227,189 + -0.4 227,190 - +0.8 227,190 - +0.2 227,290 + cynR HEPCGN_07455 0.13 +0.5 227,303 - cynR HEPCGN_07455 0.14 +0.2 227,373 + cynR HEPCGN_07455 0.22 -2.5 227,478 - cynR HEPCGN_07455 0.34 +1.2 227,669 - cynR HEPCGN_07455 0.55 +0.2 227,675 - cynR HEPCGN_07455 0.56 -0.6 227,794 - cynR HEPCGN_07455 0.69 -0.7 227,813 - cynR HEPCGN_07455 0.71 -0.5 227,991 - +0.1 228,023 - -0.7 228,039 - +0.7
Or see this region's nucleotide sequence