Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rlmA and mntP overlap by 4 nucleotides mntP and HEPCGN_04910 are separated by 428 nucleotides HEPCGN_04910 and manZ are separated by 54 nucleotides manZ and manY are separated by 12 nucleotides
HEPCGN_04900: rlmA - 23S rRNA (guanine(745)-N(1))-methyltransferase, at 855,743 to 856,552
rlmA
HEPCGN_04905: mntP - manganese efflux pump MntP, at 856,549 to 857,115
mntP
HEPCGN_04910: HEPCGN_04910 - UPF0266 membrane protein YobD, at 857,544 to 858,002
_04910
HEPCGN_04915: manZ - PTS mannose transporter subunit IID, at 858,057 to 858,908
manZ
HEPCGN_04920: manY - PTS mannose transporter subunit IIC, at 858,921 to 859,721
manY
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.547 kb on + strand at 856.548 kb on - strand at 856.678 kb on - strand, within mntP at 856.678 kb on - strand, within mntP at 857.080 kb on - strand at 857.101 kb on - strand at 857.141 kb on + strand at 857.174 kb on - strand at 857.174 kb on - strand at 857.174 kb on - strand at 857.174 kb on - strand at 857.174 kb on - strand at 857.218 kb on - strand at 857.290 kb on - strand at 857.388 kb on - strand at 857.477 kb on + strand at 857.625 kb on + strand, within HEPCGN_04910 at 857.625 kb on + strand, within HEPCGN_04910 at 857.756 kb on - strand, within HEPCGN_04910 at 857.796 kb on + strand, within HEPCGN_04910 at 857.797 kb on - strand, within HEPCGN_04910 at 857.941 kb on + strand, within HEPCGN_04910 at 857.941 kb on + strand, within HEPCGN_04910 at 858.003 kb on + strand at 858.058 kb on + strand at 858.156 kb on - strand, within manZ at 858.156 kb on - strand, within manZ at 858.195 kb on + strand, within manZ at 858.195 kb on + strand, within manZ at 858.209 kb on + strand, within manZ at 858.209 kb on + strand, within manZ at 858.252 kb on - strand, within manZ at 858.252 kb on - strand, within manZ at 858.294 kb on - strand, within manZ at 858.300 kb on + strand, within manZ at 858.301 kb on - strand, within manZ at 858.329 kb on + strand, within manZ at 858.418 kb on + strand, within manZ at 858.419 kb on - strand, within manZ at 858.474 kb on + strand, within manZ at 858.528 kb on + strand, within manZ at 858.528 kb on + strand, within manZ at 858.600 kb on - strand, within manZ at 858.726 kb on - strand, within manZ at 858.800 kb on + strand, within manZ at 858.800 kb on + strand, within manZ at 858.833 kb on + strand at 858.887 kb on + strand at 858.899 kb on + strand at 858.900 kb on - strand at 858.923 kb on - strand at 858.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 856,547 + -0.2 856,548 - +1.8 856,678 - mntP HEPCGN_04905 0.23 -0.9 856,678 - mntP HEPCGN_04905 0.23 -1.1 857,080 - -1.1 857,101 - +0.4 857,141 + +0.8 857,174 - -1.1 857,174 - -0.4 857,174 - +0.2 857,174 - -0.8 857,174 - +0.3 857,218 - -0.7 857,290 - -0.0 857,388 - +0.5 857,477 + -0.6 857,625 + HEPCGN_04910 0.18 +0.7 857,625 + HEPCGN_04910 0.18 -0.1 857,756 - HEPCGN_04910 0.46 +0.5 857,796 + HEPCGN_04910 0.55 -0.1 857,797 - HEPCGN_04910 0.55 -0.2 857,941 + HEPCGN_04910 0.86 -0.5 857,941 + HEPCGN_04910 0.86 -0.5 858,003 + -0.5 858,058 + -0.4 858,156 - manZ HEPCGN_04915 0.12 -1.0 858,156 - manZ HEPCGN_04915 0.12 +0.3 858,195 + manZ HEPCGN_04915 0.16 -0.2 858,195 + manZ HEPCGN_04915 0.16 -0.4 858,209 + manZ HEPCGN_04915 0.18 -0.4 858,209 + manZ HEPCGN_04915 0.18 +1.2 858,252 - manZ HEPCGN_04915 0.23 +0.8 858,252 - manZ HEPCGN_04915 0.23 -0.1 858,294 - manZ HEPCGN_04915 0.28 +0.9 858,300 + manZ HEPCGN_04915 0.29 +0.5 858,301 - manZ HEPCGN_04915 0.29 +0.7 858,329 + manZ HEPCGN_04915 0.32 +0.2 858,418 + manZ HEPCGN_04915 0.42 -0.8 858,419 - manZ HEPCGN_04915 0.42 -0.9 858,474 + manZ HEPCGN_04915 0.49 +0.8 858,528 + manZ HEPCGN_04915 0.55 +0.2 858,528 + manZ HEPCGN_04915 0.55 +0.2 858,600 - manZ HEPCGN_04915 0.64 -0.2 858,726 - manZ HEPCGN_04915 0.79 +0.1 858,800 + manZ HEPCGN_04915 0.87 -0.8 858,800 + manZ HEPCGN_04915 0.87 -0.0 858,833 + -1.8 858,887 + -0.9 858,899 + -0.2 858,900 - -0.0 858,923 - -0.1 858,989 - +0.2
Or see this region's nucleotide sequence