Strain Fitness in Escherichia coli ECOR38 around HEPCGN_03085

Experiment: Bas48

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwzxC and wcaK are separated by 0 nucleotideswcaK and wcaL overlap by 4 nucleotides HEPCGN_03080: wzxC - colanic acid undecaprenyl disphosphate flippase WzxC, at 525,676 to 527,154 wzxC HEPCGN_03085: wcaK - colanic acid biosynthesis pyruvyl transferase WcaK, at 527,155 to 528,507 wcaK HEPCGN_03090: wcaL - colanic acid biosynthesis glycosyltransferase WcaL, at 528,504 to 529,724 wcaL Position (kb) 527 528 529Strain fitness (log2 ratio) -1 0 1at 526.201 kb on + strand, within wzxCat 526.220 kb on + strand, within wzxCat 526.305 kb on - strand, within wzxCat 526.412 kb on - strand, within wzxCat 526.423 kb on + strand, within wzxCat 526.534 kb on + strand, within wzxCat 526.535 kb on - strand, within wzxCat 526.603 kb on - strand, within wzxCat 526.610 kb on + strand, within wzxCat 526.644 kb on + strand, within wzxCat 526.884 kb on + strand, within wzxCat 526.915 kb on + strand, within wzxCat 526.915 kb on + strand, within wzxCat 526.915 kb on + strand, within wzxCat 526.943 kb on - strand, within wzxCat 526.972 kb on + strand, within wzxCat 526.973 kb on - strand, within wzxCat 527.193 kb on + strandat 527.295 kb on - strand, within wcaKat 527.489 kb on + strand, within wcaKat 527.489 kb on + strand, within wcaKat 527.624 kb on - strand, within wcaKat 527.682 kb on + strand, within wcaKat 527.682 kb on + strand, within wcaKat 527.740 kb on + strand, within wcaKat 527.811 kb on + strand, within wcaKat 527.943 kb on + strand, within wcaKat 527.998 kb on + strand, within wcaKat 528.073 kb on - strand, within wcaKat 528.089 kb on - strand, within wcaKat 528.287 kb on - strand, within wcaKat 528.294 kb on + strand, within wcaKat 528.295 kb on - strand, within wcaKat 528.310 kb on - strand, within wcaKat 528.356 kb on + strand, within wcaKat 528.395 kb on + strandat 528.395 kb on + strandat 528.395 kb on + strandat 528.578 kb on + strandat 529.040 kb on - strand, within wcaLat 529.045 kb on + strand, within wcaLat 529.196 kb on - strand, within wcaLat 529.327 kb on - strand, within wcaLat 529.327 kb on - strand, within wcaL

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas48
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526,201 + wzxC HEPCGN_03080 0.35 +0.5
526,220 + wzxC HEPCGN_03080 0.37 -0.1
526,305 - wzxC HEPCGN_03080 0.43 +0.3
526,412 - wzxC HEPCGN_03080 0.50 +0.5
526,423 + wzxC HEPCGN_03080 0.51 -1.3
526,534 + wzxC HEPCGN_03080 0.58 -1.0
526,535 - wzxC HEPCGN_03080 0.58 -0.8
526,603 - wzxC HEPCGN_03080 0.63 +0.4
526,610 + wzxC HEPCGN_03080 0.63 -0.2
526,644 + wzxC HEPCGN_03080 0.65 -0.7
526,884 + wzxC HEPCGN_03080 0.82 -1.3
526,915 + wzxC HEPCGN_03080 0.84 -0.1
526,915 + wzxC HEPCGN_03080 0.84 +1.1
526,915 + wzxC HEPCGN_03080 0.84 +0.9
526,943 - wzxC HEPCGN_03080 0.86 -0.3
526,972 + wzxC HEPCGN_03080 0.88 +0.8
526,973 - wzxC HEPCGN_03080 0.88 -0.1
527,193 + -0.5
527,295 - wcaK HEPCGN_03085 0.10 +0.1
527,489 + wcaK HEPCGN_03085 0.25 +0.1
527,489 + wcaK HEPCGN_03085 0.25 -0.1
527,624 - wcaK HEPCGN_03085 0.35 +0.3
527,682 + wcaK HEPCGN_03085 0.39 +0.9
527,682 + wcaK HEPCGN_03085 0.39 +0.2
527,740 + wcaK HEPCGN_03085 0.43 +0.2
527,811 + wcaK HEPCGN_03085 0.48 -0.1
527,943 + wcaK HEPCGN_03085 0.58 -0.6
527,998 + wcaK HEPCGN_03085 0.62 +0.2
528,073 - wcaK HEPCGN_03085 0.68 +0.3
528,089 - wcaK HEPCGN_03085 0.69 +0.3
528,287 - wcaK HEPCGN_03085 0.84 +1.4
528,294 + wcaK HEPCGN_03085 0.84 +0.2
528,295 - wcaK HEPCGN_03085 0.84 -0.5
528,310 - wcaK HEPCGN_03085 0.85 -0.8
528,356 + wcaK HEPCGN_03085 0.89 -0.4
528,395 + -0.4
528,395 + -1.6
528,395 + +0.2
528,578 + +0.3
529,040 - wcaL HEPCGN_03090 0.44 -0.6
529,045 + wcaL HEPCGN_03090 0.44 -0.3
529,196 - wcaL HEPCGN_03090 0.57 -1.2
529,327 - wcaL HEPCGN_03090 0.67 -0.6
529,327 - wcaL HEPCGN_03090 0.67 +0.4

Or see this region's nucleotide sequence