Experiment: Bas48
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjL and ybjM are separated by 269 nucleotides ybjM and grxA are separated by 29 nucleotides grxA and HEPCGN_02050 are separated by 159 nucleotides HEPCGN_02050 and nfsA overlap by 17 nucleotides
HEPCGN_02035: ybjL - aspartate:alanine antiporter, at 332,721 to 334,406
ybjL
HEPCGN_02040: ybjM - Inner membrane protein YbjM, at 334,676 to 335,053
ybjM
HEPCGN_02045: grxA - glutaredoxin 1, at 335,083 to 335,340
grxA
HEPCGN_02050: HEPCGN_02050 - DUF1418 domain-containing protein, at 335,500 to 335,787
_02050
HEPCGN_02055: nfsA - nitroreductase NfsA, at 335,771 to 336,493
nfsA
Position (kb) 335
336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 334.129 kb on - strand, within ybjL at 334.129 kb on - strand, within ybjL at 334.208 kb on + strand, within ybjL at 334.208 kb on + strand, within ybjL at 334.260 kb on + strand at 334.370 kb on - strand at 334.523 kb on - strand at 334.531 kb on - strand at 334.538 kb on + strand at 334.538 kb on + strand at 334.568 kb on + strand at 334.586 kb on - strand at 334.590 kb on + strand at 334.613 kb on + strand at 334.613 kb on + strand at 334.618 kb on + strand at 334.685 kb on - strand at 334.906 kb on + strand, within ybjM at 334.965 kb on + strand, within ybjM at 334.966 kb on - strand, within ybjM at 334.966 kb on - strand, within ybjM at 334.966 kb on - strand, within ybjM at 335.008 kb on - strand, within ybjM at 335.011 kb on + strand, within ybjM at 335.126 kb on + strand, within grxA at 335.198 kb on - strand, within grxA at 335.229 kb on + strand, within grxA at 335.230 kb on - strand, within grxA at 335.233 kb on + strand, within grxA at 335.233 kb on + strand, within grxA at 335.233 kb on + strand, within grxA at 335.234 kb on - strand, within grxA at 335.234 kb on - strand, within grxA at 335.238 kb on - strand, within grxA at 335.238 kb on - strand, within grxA at 335.304 kb on - strand, within grxA at 335.304 kb on - strand, within grxA at 335.356 kb on - strand at 335.361 kb on + strand at 335.362 kb on - strand at 335.427 kb on + strand at 335.452 kb on + strand at 335.453 kb on - strand at 335.499 kb on + strand at 335.537 kb on + strand, within HEPCGN_02050 at 335.688 kb on + strand, within HEPCGN_02050 at 335.743 kb on + strand, within HEPCGN_02050 at 335.769 kb on + strand at 335.769 kb on + strand at 335.791 kb on + strand at 335.791 kb on + strand at 335.791 kb on + strand at 335.792 kb on - strand at 335.915 kb on - strand, within nfsA at 335.924 kb on - strand, within nfsA at 335.980 kb on - strand, within nfsA at 336.151 kb on - strand, within nfsA at 336.152 kb on + strand, within nfsA at 336.152 kb on + strand, within nfsA at 336.153 kb on - strand, within nfsA at 336.153 kb on - strand, within nfsA at 336.155 kb on - strand, within nfsA at 336.175 kb on + strand, within nfsA at 336.176 kb on - strand, within nfsA at 336.176 kb on - strand, within nfsA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas48 remove 334,129 - ybjL HEPCGN_02035 0.84 +0.0 334,129 - ybjL HEPCGN_02035 0.84 +0.8 334,208 + ybjL HEPCGN_02035 0.88 +0.2 334,208 + ybjL HEPCGN_02035 0.88 -0.1 334,260 + +1.9 334,370 - +1.0 334,523 - +0.6 334,531 - +0.5 334,538 + +0.2 334,538 + -0.3 334,568 + -1.0 334,586 - -1.3 334,590 + -1.2 334,613 + -1.0 334,613 + -1.2 334,618 + +0.1 334,685 - -0.6 334,906 + ybjM HEPCGN_02040 0.61 -0.3 334,965 + ybjM HEPCGN_02040 0.76 -0.3 334,966 - ybjM HEPCGN_02040 0.77 +0.7 334,966 - ybjM HEPCGN_02040 0.77 -0.4 334,966 - ybjM HEPCGN_02040 0.77 +0.2 335,008 - ybjM HEPCGN_02040 0.88 -0.3 335,011 + ybjM HEPCGN_02040 0.89 -0.4 335,126 + grxA HEPCGN_02045 0.17 -0.4 335,198 - grxA HEPCGN_02045 0.45 +0.0 335,229 + grxA HEPCGN_02045 0.57 -0.6 335,230 - grxA HEPCGN_02045 0.57 +0.0 335,233 + grxA HEPCGN_02045 0.58 -0.3 335,233 + grxA HEPCGN_02045 0.58 -1.3 335,233 + grxA HEPCGN_02045 0.58 -1.4 335,234 - grxA HEPCGN_02045 0.59 +0.2 335,234 - grxA HEPCGN_02045 0.59 -0.2 335,238 - grxA HEPCGN_02045 0.60 -1.6 335,238 - grxA HEPCGN_02045 0.60 +0.6 335,304 - grxA HEPCGN_02045 0.86 -0.3 335,304 - grxA HEPCGN_02045 0.86 +0.1 335,356 - +0.4 335,361 + +0.2 335,362 - +0.1 335,427 + +0.3 335,452 + +0.1 335,453 - +0.1 335,499 + +0.7 335,537 + HEPCGN_02050 0.13 +0.6 335,688 + HEPCGN_02050 0.65 +0.2 335,743 + HEPCGN_02050 0.84 -0.2 335,769 + -0.4 335,769 + -0.3 335,791 + +2.6 335,791 + -1.5 335,791 + -0.3 335,792 - +0.7 335,915 - nfsA HEPCGN_02055 0.20 +0.3 335,924 - nfsA HEPCGN_02055 0.21 +1.6 335,980 - nfsA HEPCGN_02055 0.29 +0.1 336,151 - nfsA HEPCGN_02055 0.53 -0.9 336,152 + nfsA HEPCGN_02055 0.53 +0.6 336,152 + nfsA HEPCGN_02055 0.53 -0.4 336,153 - nfsA HEPCGN_02055 0.53 -0.6 336,153 - nfsA HEPCGN_02055 0.53 -0.3 336,155 - nfsA HEPCGN_02055 0.53 -1.9 336,175 + nfsA HEPCGN_02055 0.56 +0.0 336,176 - nfsA HEPCGN_02055 0.56 -2.3 336,176 - nfsA HEPCGN_02055 0.56 -1.0
Or see this region's nucleotide sequence