Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13530

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
2,930,198	-	ubiA	OKGIIK_13520	0.72	-0.8
2,930,293	+	ubiA	OKGIIK_13520	0.83	-1.3
2,930,293	+	ubiA	OKGIIK_13520	0.83	-1.0
2,930,294	-	ubiA	OKGIIK_13520	0.83	-3.1
2,930,294	-	ubiA	OKGIIK_13520	0.83	-1.1
2,930,294	-	ubiA	OKGIIK_13520	0.83	-1.7
2,930,294	-	ubiA	OKGIIK_13520	0.83	+1.3
2,930,294	-	ubiA	OKGIIK_13520	0.83	-1.8
2,930,294	-	ubiA	OKGIIK_13520	0.83	+0.9
2,930,294	-	ubiA	OKGIIK_13520	0.83	-0.8
2,930,303	+	ubiA	OKGIIK_13520	0.84	-2.0
2,930,303	+	ubiA	OKGIIK_13520	0.84	-1.3
2,930,304	-	ubiA	OKGIIK_13520	0.84	-2.4
2,930,304	-	ubiA	OKGIIK_13520	0.84	-0.5
2,930,304	-	ubiA	OKGIIK_13520	0.84	-1.1
2,930,304	-	ubiA	OKGIIK_13520	0.84	-2.2
2,930,304	-	ubiA	OKGIIK_13520	0.84	-0.8
2,930,304	-	ubiA	OKGIIK_13520	0.84	-1.1
2,930,305	+	ubiA	OKGIIK_13520	0.84	-0.5
2,930,305	+	ubiA	OKGIIK_13520	0.84	-0.9
2,930,305	+	ubiA	OKGIIK_13520	0.84	-1.3
2,930,306	-	ubiA	OKGIIK_13520	0.84	-0.9
2,930,482	+				-1.3
2,930,482	+				-1.5
2,930,482	+				-0.8
2,930,482	+				-0.8
2,930,482	+				-0.1
2,930,482	+				+0.4
2,930,482	+				-1.2
2,930,482	+				-0.3
2,930,482	+				-1.1
2,930,482	+				-0.8
2,930,482	+				-0.5
2,930,482	+				-0.5
2,930,482	+				-0.4
2,930,482	+				+0.3
2,930,482	+				-1.5
2,930,482	+				-3.0
2,930,483	-				-1.3
2,930,483	-				-0.5
2,930,483	-				-0.8
2,930,483	-				-0.8
2,930,483	-				-0.5
2,930,483	-				-0.3
2,930,483	-				-2.5
2,930,483	-				-2.7
2,930,483	-				-0.5
2,930,483	-				-0.2
2,930,483	-				-2.4
2,930,483	-				-0.8
2,930,483	-				+0.2
2,930,483	-				+1.0
2,930,483	-				-0.1
2,930,536	+	ubiG	OKGIIK_13525	0.12	-1.8
2,930,536	+	ubiG	OKGIIK_13525	0.12	-2.5
2,930,536	+	ubiG	OKGIIK_13525	0.12	-0.5
2,930,536	+	ubiG	OKGIIK_13525	0.12	-1.5
2,930,536	+	ubiG	OKGIIK_13525	0.12	+0.5
2,930,536	+	ubiG	OKGIIK_13525	0.12	-1.4
2,930,537	-	ubiG	OKGIIK_13525	0.12	-1.7
2,930,537	-	ubiG	OKGIIK_13525	0.12	-1.1
2,930,537	-	ubiG	OKGIIK_13525	0.12	-0.5
2,930,537	-	ubiG	OKGIIK_13525	0.12	-0.5
2,930,537	-	ubiG	OKGIIK_13525	0.12	+0.5
2,930,537	-	ubiG	OKGIIK_13525	0.12	-2.4
2,930,537	-	ubiG	OKGIIK_13525	0.12	+1.8
2,930,537	-	ubiG	OKGIIK_13525	0.12	-1.8
2,930,537	-	ubiG	OKGIIK_13525	0.12	-2.8
2,930,537	-	ubiG	OKGIIK_13525	0.12	-0.3
2,930,537	-	ubiG	OKGIIK_13525	0.12	-2.0
2,930,620	+	ubiG	OKGIIK_13525	0.23	-1.8
2,930,620	+	ubiG	OKGIIK_13525	0.23	-2.2
2,930,621	-	ubiG	OKGIIK_13525	0.23	-0.1
2,930,621	-	ubiG	OKGIIK_13525	0.23	-1.0
2,930,656	+	ubiG	OKGIIK_13525	0.28	-1.7
2,930,656	+	ubiG	OKGIIK_13525	0.28	+0.3
2,930,656	+	ubiG	OKGIIK_13525	0.28	+0.5
2,930,656	+	ubiG	OKGIIK_13525	0.28	-0.4
2,930,657	-	ubiG	OKGIIK_13525	0.29	-1.2
2,930,657	-	ubiG	OKGIIK_13525	0.29	-1.1
2,930,657	-	ubiG	OKGIIK_13525	0.29	-0.7
2,930,657	-	ubiG	OKGIIK_13525	0.29	-2.0
2,930,657	-	ubiG	OKGIIK_13525	0.29	-0.5
2,930,657	-	ubiG	OKGIIK_13525	0.29	+0.9
2,930,853	+	ubiG	OKGIIK_13525	0.56	-1.8
2,930,853	+	ubiG	OKGIIK_13525	0.56	+0.0
2,930,853	+	ubiG	OKGIIK_13525	0.56	-1.3
2,930,854	-	ubiG	OKGIIK_13525	0.56	-1.3
2,930,854	-	ubiG	OKGIIK_13525	0.56	-2.0
2,930,854	-	ubiG	OKGIIK_13525	0.56	+0.8
2,930,854	-	ubiG	OKGIIK_13525	0.56	-1.1
2,930,854	-	ubiG	OKGIIK_13525	0.56	-1.1
2,930,854	-	ubiG	OKGIIK_13525	0.56	-0.5
2,930,854	-	ubiG	OKGIIK_13525	0.56	-0.1
2,930,857	+	ubiG	OKGIIK_13525	0.57	-0.4
2,930,863	+	ubiG	OKGIIK_13525	0.58	-1.9
2,930,864	-	ubiG	OKGIIK_13525	0.58	+0.3
2,931,506	+		OKGIIK_13530	0.32	-0.3
2,931,507	-		OKGIIK_13530	0.32	-2.2
2,931,507	-		OKGIIK_13530	0.32	-1.5
2,931,863	+		OKGIIK_13530	0.63	-0.8
2,931,863	+		OKGIIK_13530	0.63	-1.3
2,931,864	-		OKGIIK_13530	0.63	+1.5
2,931,911	+		OKGIIK_13530	0.67	-0.2
2,932,100	+		OKGIIK_13530	0.83	-0.5
2,932,100	+		OKGIIK_13530	0.83	-2.7
2,932,100	+		OKGIIK_13530	0.83	-1.5
2,932,101	-		OKGIIK_13530	0.83	-1.3
2,932,101	-		OKGIIK_13530	0.83	+1.1
2,932,101	-		OKGIIK_13530	0.83	-0.7
2,932,101	-		OKGIIK_13530	0.83	-2.1
2,932,238	+				+1.1
2,932,238	+				-0.1
2,932,238	+				-2.1
2,932,238	+				+0.5
2,932,238	+				-0.4
2,932,238	+				-1.1
2,932,239	-				-0.1
2,932,399	+	luxS	OKGIIK_13535	0.23	-0.8
2,932,399	+	luxS	OKGIIK_13535	0.23	-2.2
2,932,399	+	luxS	OKGIIK_13535	0.23	+0.2
2,932,399	+	luxS	OKGIIK_13535	0.23	+0.3
2,932,400	-	luxS	OKGIIK_13535	0.23	-0.4
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.7
2,932,492	+	luxS	OKGIIK_13535	0.42	-1.1
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.3
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.5
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.4
2,932,492	+	luxS	OKGIIK_13535	0.42	-1.1
2,932,492	+	luxS	OKGIIK_13535	0.42	-0.8
2,932,492	+	luxS	OKGIIK_13535	0.42	-0.6
2,932,492	+	luxS	OKGIIK_13535	0.42	+0.7
2,932,492	+	luxS	OKGIIK_13535	0.42	-0.6
2,932,492	+	luxS	OKGIIK_13535	0.42	-0.5
2,932,493	-	luxS	OKGIIK_13535	0.42	-0.7
2,932,493	-	luxS	OKGIIK_13535	0.42	+0.5
2,932,493	-	luxS	OKGIIK_13535	0.42	+0.1
2,932,493	-	luxS	OKGIIK_13535	0.42	-0.5
2,932,648	+	luxS	OKGIIK_13535	0.74	-1.5
2,932,648	+	luxS	OKGIIK_13535	0.74	-0.7
2,932,649	-	luxS	OKGIIK_13535	0.74	-1.5
2,932,649	-	luxS	OKGIIK_13535	0.74	+1.2
2,932,649	-	luxS	OKGIIK_13535	0.74	-1.7
2,932,649	-	luxS	OKGIIK_13535	0.74	-0.5
2,932,649	-	luxS	OKGIIK_13535	0.74	-0.8
2,932,649	-	luxS	OKGIIK_13535	0.74	+0.9
2,932,737	-				-0.5
2,932,790	-				-0.5
2,932,836	+				+0.1
2,932,836	+				+1.5
2,932,836	+				+0.9
2,932,836	+				-0.5
2,932,837	-				-1.9
2,932,837	-				+0.5
2,932,837	-				-0.5
2,932,878	+				+0.6
2,932,878	+				-0.5
2,932,878	+				+0.2
2,932,878	+				-1.4
2,932,879	-				+0.2
2,932,879	-				-0.1
2,932,879	-				+1.4
2,933,109	+	ycjR	OKGIIK_13540	0.25	+0.2
2,933,109	+	ycjR	OKGIIK_13540	0.25	+0.8
2,933,109	+	ycjR	OKGIIK_13540	0.25	-0.1
2,933,109	+	ycjR	OKGIIK_13540	0.25	-0.9
2,933,109	+	ycjR	OKGIIK_13540	0.25	-1.8
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.1
2,933,110	-	ycjR	OKGIIK_13540	0.25	-0.3
2,933,110	-	ycjR	OKGIIK_13540	0.25	+1.5
2,933,110	-	ycjR	OKGIIK_13540	0.25	-1.1
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.7
2,933,110	-	ycjR	OKGIIK_13540	0.25	-0.8
2,933,110	-	ycjR	OKGIIK_13540	0.25	-0.5
2,933,110	-	ycjR	OKGIIK_13540	0.25	-1.3
2,933,110	-	ycjR	OKGIIK_13540	0.25	-0.8
2,933,110	-	ycjR	OKGIIK_13540	0.25	-0.5
2,933,110	-	ycjR	OKGIIK_13540	0.25	-1.1
2,933,110	-	ycjR	OKGIIK_13540	0.25	+0.3
2,933,148	+	ycjR	OKGIIK_13540	0.28	-1.1
2,933,148	+	ycjR	OKGIIK_13540	0.28	-0.5
2,933,148	+	ycjR	OKGIIK_13540	0.28	-1.3
2,933,149	-	ycjR	OKGIIK_13540	0.28	+0.3
2,933,149	-	ycjR	OKGIIK_13540	0.28	-0.3
2,933,149	-	ycjR	OKGIIK_13540	0.28	+0.6
2,933,149	-	ycjR	OKGIIK_13540	0.28	-0.7
2,933,256	+	ycjR	OKGIIK_13540	0.37	-0.8
2,933,257	-	ycjR	OKGIIK_13540	0.37	-0.5
2,933,257	-	ycjR	OKGIIK_13540	0.37	-0.5
2,933,286	+	ycjR	OKGIIK_13540	0.39	-0.5
2,933,286	+	ycjR	OKGIIK_13540	0.39	-0.5
2,933,286	+	ycjR	OKGIIK_13540	0.39	-0.1
2,933,287	-	ycjR	OKGIIK_13540	0.39	-1.5
2,933,287	-	ycjR	OKGIIK_13540	0.39	-1.5
2,933,287	-	ycjR	OKGIIK_13540	0.39	-1.1
2,933,287	-	ycjR	OKGIIK_13540	0.39	-0.7