Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11905

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
2,562,311	+				-0.2
2,562,526	+	trmB	OKGIIK_11900	0.17	+0.9
2,562,526	+	trmB	OKGIIK_11900	0.17	-1.6
2,562,527	-	trmB	OKGIIK_11900	0.17	+0.0
2,562,745	+	trmB	OKGIIK_11900	0.48	-1.3
2,562,745	+	trmB	OKGIIK_11900	0.48	-2.0
2,562,745	+	trmB	OKGIIK_11900	0.48	+1.0
2,562,745	+	trmB	OKGIIK_11900	0.48	-1.2
2,562,745	+	trmB	OKGIIK_11900	0.48	+0.2
2,562,745	+	trmB	OKGIIK_11900	0.48	+0.4
2,562,746	-	trmB	OKGIIK_11900	0.48	+0.7
2,562,746	-	trmB	OKGIIK_11900	0.48	-0.7
2,562,746	-	trmB	OKGIIK_11900	0.48	-0.8
2,562,746	-	trmB	OKGIIK_11900	0.48	-0.3
2,562,943	+	trmB	OKGIIK_11900	0.76	+0.0
2,562,944	-	trmB	OKGIIK_11900	0.76	-0.3
2,563,096	+				+0.8
2,563,096	+				-0.2
2,563,096	+				-1.4
2,563,096	+				+0.1
2,563,097	-				-0.5
2,563,097	-				-1.9
2,563,141	+				+1.6
2,563,142	-				+1.4
2,563,142	-				+0.4
2,563,258	+				+0.4
2,563,258	+				-0.6
2,563,265	+				-0.3
2,563,265	+				-1.6
2,563,266	-				-0.4
2,563,422	+	ycjD	OKGIIK_11905	0.39	+0.3
2,563,422	+	ycjD	OKGIIK_11905	0.39	-0.5
2,563,423	-	ycjD	OKGIIK_11905	0.39	+2.0
2,563,423	-	ycjD	OKGIIK_11905	0.39	-1.4
2,563,500	+	ycjD	OKGIIK_11905	0.61	+2.0
2,563,500	+	ycjD	OKGIIK_11905	0.61	-1.2
2,563,500	+	ycjD	OKGIIK_11905	0.61	-1.0
2,563,500	+	ycjD	OKGIIK_11905	0.61	+1.1
2,563,500	+	ycjD	OKGIIK_11905	0.61	+1.6
2,563,501	-	ycjD	OKGIIK_11905	0.62	+1.4
2,563,563	+	ycjD	OKGIIK_11905	0.80	-2.3
2,563,563	+	ycjD	OKGIIK_11905	0.80	-0.6
2,563,563	+	ycjD	OKGIIK_11905	0.80	-1.4
2,563,564	-	ycjD	OKGIIK_11905	0.80	-1.9
2,563,564	-	ycjD	OKGIIK_11905	0.80	-0.2
2,563,564	-	ycjD	OKGIIK_11905	0.80	+0.4
2,563,564	-	ycjD	OKGIIK_11905	0.80	+1.3
2,563,564	-	ycjD	OKGIIK_11905	0.80	-0.8
2,563,564	-	ycjD	OKGIIK_11905	0.80	-2.6
2,563,564	-	ycjD	OKGIIK_11905	0.80	-1.3
2,563,623	-				+1.0
2,563,623	-				+0.0
2,563,624	-				-1.2
2,563,671	-				+0.0
2,563,671	-				-2.5
2,563,721	-				+0.4
2,563,825	+				-1.0
2,563,825	+				-0.2
2,563,825	+				+1.2
2,563,825	+				+0.8
2,563,825	+				-0.0
2,563,825	+				-0.1
2,563,826	-				+1.2
2,563,826	-				-2.1
2,563,827	+				+0.7
2,563,827	+				-0.0
2,563,827	+				-1.0
2,563,827	+				-0.2
2,563,827	+				+1.0
2,563,827	+				+0.5
2,563,827	+				+1.6
2,563,827	+				+1.1
2,563,827	+				-1.0
2,563,827	+				-2.1
2,563,828	-				-0.1
2,563,828	-				-1.6
2,563,828	-				-1.1
2,563,828	-				+1.7
2,563,962	+				+2.0
2,563,963	-				+0.0
2,563,963	-				+1.2
2,563,963	-				+0.0
2,563,998	+				+0.0
2,564,540	+	citT	OKGIIK_11910	0.33	+0.6
2,564,540	+	citT	OKGIIK_11910	0.33	-1.6
2,564,540	+	citT	OKGIIK_11910	0.33	+0.0
2,564,540	+	citT	OKGIIK_11910	0.33	-0.4
2,564,540	+	citT	OKGIIK_11910	0.33	-2.4
2,564,541	-	citT	OKGIIK_11910	0.33	+0.0
2,564,541	-	citT	OKGIIK_11910	0.33	+1.0
2,564,546	+	citT	OKGIIK_11910	0.34	+1.0
2,564,546	+	citT	OKGIIK_11910	0.34	-1.7
2,564,546	+	citT	OKGIIK_11910	0.34	-1.0
2,564,547	-	citT	OKGIIK_11910	0.34	+0.2
2,564,547	-	citT	OKGIIK_11910	0.34	+0.0
2,564,621	+	citT	OKGIIK_11910	0.38	-1.4
2,564,621	+	citT	OKGIIK_11910	0.38	+0.4
2,564,621	+	citT	OKGIIK_11910	0.38	-0.6
2,564,621	+	citT	OKGIIK_11910	0.38	-0.5
2,564,621	+	citT	OKGIIK_11910	0.38	+0.6
2,564,621	+	citT	OKGIIK_11910	0.38	-0.7
2,564,621	+	citT	OKGIIK_11910	0.38	-0.3
2,564,621	+	citT	OKGIIK_11910	0.38	+1.0
2,564,622	-	citT	OKGIIK_11910	0.38	-1.0
2,564,622	-	citT	OKGIIK_11910	0.38	-1.2
2,564,622	-	citT	OKGIIK_11910	0.38	+1.6
2,564,622	-	citT	OKGIIK_11910	0.38	-0.9
2,564,622	-	citT	OKGIIK_11910	0.38	+2.3
2,564,622	-	citT	OKGIIK_11910	0.38	+0.4
2,564,622	-	citT	OKGIIK_11910	0.38	-0.4
2,564,622	-	citT	OKGIIK_11910	0.38	-0.8
2,564,622	-	citT	OKGIIK_11910	0.38	-0.7