Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11160

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
2,395,199	+	yjbQ	OKGIIK_11150	0.65	-1.0
2,395,199	+	yjbQ	OKGIIK_11150	0.65	-0.4
2,395,199	+	yjbQ	OKGIIK_11150	0.65	-1.0
2,395,199	+	yjbQ	OKGIIK_11150	0.65	+0.6
2,395,199	+	yjbQ	OKGIIK_11150	0.65	-0.4
2,395,199	+	yjbQ	OKGIIK_11150	0.65	-0.4
2,395,199	+	yjbQ	OKGIIK_11150	0.65	-1.2
2,395,199	+	yjbQ	OKGIIK_11150	0.65	-1.0
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-1.2
2,395,200	-	yjbQ	OKGIIK_11150	0.65	+0.3
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-1.0
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-0.6
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-1.0
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-0.2
2,395,200	-	yjbQ	OKGIIK_11150	0.65	+0.6
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-0.7
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-0.7
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-0.5
2,395,200	-	yjbQ	OKGIIK_11150	0.65	+1.2
2,395,200	-	yjbQ	OKGIIK_11150	0.65	-0.7
2,395,200	-	yjbQ	OKGIIK_11150	0.65	+1.9
2,396,008	+				-2.3
2,396,008	+				+0.0
2,396,008	+				-0.4
2,396,008	+				-0.6
2,396,008	+				+0.6
2,396,008	+				-2.3
2,396,008	+				-0.7
2,396,008	+				-1.2
2,396,008	+				+1.2
2,396,009	-				+0.4
2,396,009	-				-1.2
2,396,009	-				-0.4
2,396,009	-				-2.0
2,396,032	+				-0.7
2,396,032	+				+0.1
2,396,033	-				+0.2
2,396,033	-				-1.5
2,396,033	-				-0.4
2,396,109	+				-1.1
2,396,110	-				-2.8
2,396,110	-				-1.8
2,396,227	+				+0.6
2,396,227	+				-1.0
2,396,228	-				+1.6
2,396,228	-				-1.0
2,396,228	-				-0.4
2,396,260	+	tda10	OKGIIK_11160	0.11	+0.0
2,396,260	+	tda10	OKGIIK_11160	0.11	-0.1
2,396,260	+	tda10	OKGIIK_11160	0.11	-2.3
2,396,260	+	tda10	OKGIIK_11160	0.11	-1.9
2,396,260	+	tda10	OKGIIK_11160	0.11	-2.1
2,396,260	+	tda10	OKGIIK_11160	0.11	+0.1
2,396,260	+	tda10	OKGIIK_11160	0.11	+0.2
2,396,260	+	tda10	OKGIIK_11160	0.11	+1.0
2,396,260	+	tda10	OKGIIK_11160	0.11	-1.2
2,396,260	+	tda10	OKGIIK_11160	0.11	-1.9
2,396,260	+	tda10	OKGIIK_11160	0.11	-0.4
2,396,260	+	tda10	OKGIIK_11160	0.11	-0.7
2,396,260	+	tda10	OKGIIK_11160	0.11	-0.2
2,396,260	+	tda10	OKGIIK_11160	0.11	-2.9
2,396,261	-	tda10	OKGIIK_11160	0.11	-0.1
2,396,261	-	tda10	OKGIIK_11160	0.11	-0.7
2,396,261	-	tda10	OKGIIK_11160	0.11	-0.9
2,396,261	-	tda10	OKGIIK_11160	0.11	-0.7
2,396,261	-	tda10	OKGIIK_11160	0.11	+0.0
2,396,261	-	tda10	OKGIIK_11160	0.11	-0.4
2,396,261	-	tda10	OKGIIK_11160	0.11	+0.6
2,396,261	-	tda10	OKGIIK_11160	0.11	-1.8
2,396,261	-	tda10	OKGIIK_11160	0.11	+0.3
2,396,261	-	tda10	OKGIIK_11160	0.11	+0.4
2,396,261	-	tda10	OKGIIK_11160	0.11	-0.7
2,396,377	+	tda10	OKGIIK_11160	0.25	-0.7
2,396,377	+	tda10	OKGIIK_11160	0.25	-1.2
2,396,377	+	tda10	OKGIIK_11160	0.25	-0.4
2,396,377	+	tda10	OKGIIK_11160	0.25	-0.7
2,396,377	+	tda10	OKGIIK_11160	0.25	-1.3
2,396,377	+	tda10	OKGIIK_11160	0.25	-1.0
2,396,377	+	tda10	OKGIIK_11160	0.25	-1.6
2,396,377	+	tda10	OKGIIK_11160	0.25	-1.0
2,396,377	+	tda10	OKGIIK_11160	0.25	-1.7
2,396,377	+	tda10	OKGIIK_11160	0.25	+0.9
2,396,377	+	tda10	OKGIIK_11160	0.25	+0.0
2,396,377	+	tda10	OKGIIK_11160	0.25	-2.2
2,396,377	+	tda10	OKGIIK_11160	0.25	-1.6
2,396,377	+	tda10	OKGIIK_11160	0.25	+0.4
2,396,377	+	tda10	OKGIIK_11160	0.25	+0.4
2,396,377	+	tda10	OKGIIK_11160	0.25	+0.3
2,396,378	-	tda10	OKGIIK_11160	0.25	-1.4
2,396,378	-	tda10	OKGIIK_11160	0.25	-1.5
2,396,378	-	tda10	OKGIIK_11160	0.25	-1.0
2,396,378	-	tda10	OKGIIK_11160	0.25	-1.6
2,396,378	-	tda10	OKGIIK_11160	0.25	+1.3
2,396,378	-	tda10	OKGIIK_11160	0.25	-1.3
2,396,378	-	tda10	OKGIIK_11160	0.25	-0.5
2,396,378	-	tda10	OKGIIK_11160	0.25	-0.4
2,396,378	-	tda10	OKGIIK_11160	0.25	+1.9
2,396,378	-	tda10	OKGIIK_11160	0.25	-0.4
2,396,378	-	tda10	OKGIIK_11160	0.25	-1.4
2,396,378	-	tda10	OKGIIK_11160	0.25	-1.4
2,396,378	-	tda10	OKGIIK_11160	0.25	-0.9
2,396,378	-	tda10	OKGIIK_11160	0.25	-0.4
2,396,378	-	tda10	OKGIIK_11160	0.25	+0.4
2,396,378	-	tda10	OKGIIK_11160	0.25	+0.0
2,396,378	-	tda10	OKGIIK_11160	0.25	-0.7
2,396,378	-	tda10	OKGIIK_11160	0.25	-2.8
2,396,378	-	tda10	OKGIIK_11160	0.25	-0.9
2,396,378	-	tda10	OKGIIK_11160	0.25	+0.3
2,396,380	+	tda10	OKGIIK_11160	0.25	+0.4
2,396,380	+	tda10	OKGIIK_11160	0.25	-0.4
2,396,381	-	tda10	OKGIIK_11160	0.25	+0.3
2,396,381	-	tda10	OKGIIK_11160	0.25	+0.8
2,396,381	-	tda10	OKGIIK_11160	0.25	-1.7
2,396,381	-	tda10	OKGIIK_11160	0.25	-1.1
2,396,381	-	tda10	OKGIIK_11160	0.25	-1.1
2,396,381	-	tda10	OKGIIK_11160	0.25	+0.2
2,396,381	-	tda10	OKGIIK_11160	0.25	-0.7
2,396,381	-	tda10	OKGIIK_11160	0.25	-0.6
2,396,737	+	tda10	OKGIIK_11160	0.68	-1.1
2,396,737	+	tda10	OKGIIK_11160	0.68	-0.4
2,396,959	+				-1.2
2,396,959	+				-1.0
2,396,959	+				-1.1
2,396,959	+				-0.4
2,396,959	+				-1.0
2,396,959	+				-0.7
2,396,959	+				-1.6
2,396,959	+				-2.1
2,396,960	-				-2.3
2,396,960	-				-1.4
2,396,960	-				-0.5
2,396,960	-				+0.6
2,396,960	-				+0.1
2,396,960	-				-1.2
2,397,403	+				+0.6
2,397,403	+				-0.7
2,397,403	+				-0.4
2,397,404	-	ybjQ	OKGIIK_11170	0.10	-0.7
2,397,404	-	ybjQ	OKGIIK_11170	0.10	-1.4
2,397,448	+	ybjQ	OKGIIK_11170	0.23	-0.4
2,397,448	+	ybjQ	OKGIIK_11170	0.23	-1.2
2,397,448	+	ybjQ	OKGIIK_11170	0.23	+0.2
2,397,449	-	ybjQ	OKGIIK_11170	0.23	-0.2
2,397,449	-	ybjQ	OKGIIK_11170	0.23	-0.2
2,397,544	+	ybjQ	OKGIIK_11170	0.51	+1.0
2,397,544	+	ybjQ	OKGIIK_11170	0.51	-0.6
2,397,544	+	ybjQ	OKGIIK_11170	0.51	-1.2
2,397,544	+	ybjQ	OKGIIK_11170	0.51	-0.4
2,397,544	+	ybjQ	OKGIIK_11170	0.51	-2.5
2,397,545	-	ybjQ	OKGIIK_11170	0.51	+0.2
2,397,545	-	ybjQ	OKGIIK_11170	0.51	+0.3
2,397,545	-	ybjQ	OKGIIK_11170	0.51	-0.4
2,397,545	-	ybjQ	OKGIIK_11170	0.51	-1.0
2,397,545	-	ybjQ	OKGIIK_11170	0.51	-2.1
2,397,545	-	ybjQ	OKGIIK_11170	0.51	+1.1
2,397,545	-	ybjQ	OKGIIK_11170	0.51	-1.1
2,397,545	-	ybjQ	OKGIIK_11170	0.51	-1.6
2,397,759	+				-0.4
2,397,759	+				+0.9
2,397,760	-				-0.4
2,397,760	-				+1.3
2,397,900	+		OKGIIK_11175	0.19	-0.4
2,397,900	+		OKGIIK_11175	0.19	-0.7
2,397,900	+		OKGIIK_11175	0.19	-0.4
2,397,900	+		OKGIIK_11175	0.19	-2.0
2,397,901	-		OKGIIK_11175	0.20	+0.9
2,397,901	-		OKGIIK_11175	0.20	-0.4
2,397,901	-		OKGIIK_11175	0.20	-1.7
2,397,901	-		OKGIIK_11175	0.20	+0.0
2,397,901	-		OKGIIK_11175	0.20	-0.7
2,397,942	+		OKGIIK_11175	0.24	+0.0
2,397,942	+		OKGIIK_11175	0.24	-1.2
2,397,942	+		OKGIIK_11175	0.24	-0.8
2,397,942	+		OKGIIK_11175	0.24	-0.2
2,397,942	+		OKGIIK_11175	0.24	-0.3
2,397,942	+		OKGIIK_11175	0.24	-0.7
2,397,942	+		OKGIIK_11175	0.24	+1.2
2,397,942	+		OKGIIK_11175	0.24	+1.6
2,397,943	-		OKGIIK_11175	0.25	-0.1
2,397,943	-		OKGIIK_11175	0.25	+0.8
2,397,943	-		OKGIIK_11175	0.25	-0.4
2,397,943	-		OKGIIK_11175	0.25	-0.8
2,397,943	-		OKGIIK_11175	0.25	-1.9