Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08480

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsdhB,frdB and sdhA are separated by 99 nucleotidessdhA and sdhD are separated by 4 nucleotidessdhD and sdhC overlap by 4 nucleotides OKGIIK_08475: sdhB,frdB - succinate dehydrogenase iron-sulfur subunit, at 1,857,214 to 1,857,996 sdhB,frdB OKGIIK_08480: sdhA - succinate dehydrogenase flavoprotein subunit, at 1,858,096 to 1,859,883 sdhA OKGIIK_08485: sdhD - succinate dehydrogenase, hydrophobic membrane anchor protein, at 1,859,888 to 1,860,301 sdhD OKGIIK_08490: sdhC - succinate dehydrogenase, cytochrome b556 subunit, at 1,860,298 to 1,860,693 sdhC Position (kb) 1858 1859 1860Strain fitness (log2 ratio) -1 0 1at 1857.117 kb on + strandat 1857.117 kb on + strandat 1857.117 kb on + strandat 1857.215 kb on + strandat 1858.003 kb on - strandat 1860.323 kb on - strandat 1860.323 kb on - strandat 1860.323 kb on - strandat 1860.323 kb on - strandat 1860.751 kb on - strandat 1860.751 kb on - strandat 1860.822 kb on - strandat 1860.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,857,117 + -1.1
1,857,117 + -0.3
1,857,117 + -0.6
1,857,215 + -0.6
1,858,003 - -0.3
1,860,323 - -0.4
1,860,323 - +0.0
1,860,323 - -0.3
1,860,323 - +0.4
1,860,751 - +1.3
1,860,751 - +0.3
1,860,822 - +1.0
1,860,822 - -0.4

Or see this region's nucleotide sequence