Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt adhE and OKGIIK_07715 are separated by 74 nucleotides OKGIIK_07715 and OKGIIK_07720 are separated by 117 nucleotides
OKGIIK_07710: adhE - aldehyde dehydrogenase, at 1,705,942 to 1,707,372
adhE
OKGIIK_07715: OKGIIK_07715 - DUF218 domain-containing protein, at 1,707,447 to 1,708,211
_07715
OKGIIK_07720: OKGIIK_07720 - Phospholipase, at 1,708,329 to 1,709,759
_07720
Position (kb)
1707
1708
1709 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1706.773 kb on + strand, within adhE at 1706.773 kb on + strand, within adhE at 1706.773 kb on + strand, within adhE at 1706.774 kb on - strand, within adhE at 1706.774 kb on - strand, within adhE at 1706.774 kb on - strand, within adhE at 1706.774 kb on - strand, within adhE at 1706.774 kb on - strand, within adhE at 1706.774 kb on - strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.812 kb on + strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.813 kb on - strand, within adhE at 1706.830 kb on + strand, within adhE at 1706.830 kb on + strand, within adhE at 1706.830 kb on + strand, within adhE at 1706.831 kb on - strand, within adhE at 1706.831 kb on - strand, within adhE at 1706.831 kb on - strand, within adhE at 1707.151 kb on + strand, within adhE at 1707.319 kb on + strand at 1707.448 kb on + strand at 1707.448 kb on + strand at 1707.448 kb on + strand at 1707.448 kb on + strand at 1707.448 kb on + strand at 1707.448 kb on + strand at 1707.448 kb on + strand at 1707.449 kb on - strand at 1707.449 kb on - strand at 1707.449 kb on - strand at 1707.449 kb on - strand at 1707.449 kb on - strand at 1707.496 kb on + strand at 1707.496 kb on + strand at 1707.496 kb on + strand at 1707.497 kb on - strand at 1707.497 kb on - strand at 1707.523 kb on + strand at 1707.523 kb on + strand at 1707.523 kb on + strand at 1707.523 kb on + strand at 1707.523 kb on + strand at 1707.523 kb on + strand at 1707.523 kb on + strand at 1707.524 kb on - strand, within OKGIIK_07715 at 1707.524 kb on - strand, within OKGIIK_07715 at 1707.524 kb on - strand, within OKGIIK_07715 at 1707.524 kb on - strand, within OKGIIK_07715 at 1707.524 kb on - strand, within OKGIIK_07715 at 1707.524 kb on - strand, within OKGIIK_07715 at 1707.524 kb on - strand, within OKGIIK_07715 at 1707.559 kb on + strand, within OKGIIK_07715 at 1707.560 kb on - strand, within OKGIIK_07715 at 1707.560 kb on - strand, within OKGIIK_07715 at 1707.560 kb on - strand, within OKGIIK_07715 at 1707.560 kb on - strand, within OKGIIK_07715 at 1707.595 kb on + strand, within OKGIIK_07715 at 1707.595 kb on + strand, within OKGIIK_07715 at 1707.595 kb on + strand, within OKGIIK_07715 at 1707.595 kb on + strand, within OKGIIK_07715 at 1707.595 kb on + strand, within OKGIIK_07715 at 1707.595 kb on + strand, within OKGIIK_07715 at 1707.595 kb on + strand, within OKGIIK_07715 at 1707.595 kb on + strand, within OKGIIK_07715 at 1707.596 kb on - strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.640 kb on + strand, within OKGIIK_07715 at 1707.641 kb on - strand, within OKGIIK_07715 at 1707.641 kb on - strand, within OKGIIK_07715 at 1707.641 kb on - strand, within OKGIIK_07715 at 1707.641 kb on - strand, within OKGIIK_07715 at 1707.641 kb on - strand, within OKGIIK_07715 at 1707.641 kb on - strand, within OKGIIK_07715 at 1707.641 kb on - strand, within OKGIIK_07715 at 1707.700 kb on + strand, within OKGIIK_07715 at 1707.700 kb on + strand, within OKGIIK_07715 at 1707.701 kb on - strand, within OKGIIK_07715 at 1707.701 kb on - strand, within OKGIIK_07715 at 1707.701 kb on - strand, within OKGIIK_07715 at 1707.701 kb on - strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.743 kb on + strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.744 kb on - strand, within OKGIIK_07715 at 1707.811 kb on + strand, within OKGIIK_07715 at 1707.904 kb on + strand, within OKGIIK_07715 at 1707.978 kb on + strand, within OKGIIK_07715 at 1707.978 kb on + strand, within OKGIIK_07715 at 1707.979 kb on - strand, within OKGIIK_07715 at 1708.046 kb on - strand, within OKGIIK_07715 at 1708.248 kb on + strand at 1708.248 kb on + strand at 1708.248 kb on + strand at 1708.296 kb on - strand at 1708.377 kb on - strand at 1708.377 kb on - strand at 1708.380 kb on + strand at 1708.380 kb on + strand at 1708.380 kb on + strand at 1708.381 kb on - strand at 1708.381 kb on - strand at 1708.464 kb on + strand at 1708.464 kb on + strand at 1708.464 kb on + strand at 1708.464 kb on + strand at 1708.464 kb on + strand at 1708.464 kb on + strand at 1708.464 kb on + strand at 1708.464 kb on + strand at 1708.465 kb on - strand at 1708.465 kb on - strand at 1708.465 kb on - strand at 1708.465 kb on - strand at 1708.465 kb on - strand at 1708.465 kb on - strand at 1708.854 kb on + strand, within OKGIIK_07720 at 1708.854 kb on + strand, within OKGIIK_07720 at 1708.854 kb on + strand, within OKGIIK_07720 at 1708.854 kb on + strand, within OKGIIK_07720 at 1708.855 kb on - strand, within OKGIIK_07720 at 1708.855 kb on - strand, within OKGIIK_07720 at 1708.855 kb on - strand, within OKGIIK_07720 at 1708.855 kb on - strand, within OKGIIK_07720 at 1708.896 kb on + strand, within OKGIIK_07720 at 1708.896 kb on + strand, within OKGIIK_07720 at 1708.897 kb on - strand, within OKGIIK_07720 at 1708.897 kb on - strand, within OKGIIK_07720 at 1708.897 kb on - strand, within OKGIIK_07720 at 1708.897 kb on - strand, within OKGIIK_07720 at 1708.897 kb on - strand, within OKGIIK_07720 at 1708.897 kb on - strand, within OKGIIK_07720 at 1708.914 kb on + strand, within OKGIIK_07720 at 1708.914 kb on + strand, within OKGIIK_07720 at 1708.914 kb on + strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1708.915 kb on - strand, within OKGIIK_07720 at 1709.170 kb on - strand, within OKGIIK_07720 at 1709.170 kb on - strand, within OKGIIK_07720
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 1,706,773 + adhE OKGIIK_07710 0.58 +0.7 1,706,773 + adhE OKGIIK_07710 0.58 +1.1 1,706,773 + adhE OKGIIK_07710 0.58 -0.1 1,706,774 - adhE OKGIIK_07710 0.58 +0.9 1,706,774 - adhE OKGIIK_07710 0.58 -0.3 1,706,774 - adhE OKGIIK_07710 0.58 +3.1 1,706,774 - adhE OKGIIK_07710 0.58 -0.8 1,706,774 - adhE OKGIIK_07710 0.58 -2.0 1,706,774 - adhE OKGIIK_07710 0.58 +0.7 1,706,812 + adhE OKGIIK_07710 0.61 -0.4 1,706,812 + adhE OKGIIK_07710 0.61 +0.7 1,706,812 + adhE OKGIIK_07710 0.61 +0.9 1,706,812 + adhE OKGIIK_07710 0.61 -0.5 1,706,812 + adhE OKGIIK_07710 0.61 +1.2 1,706,812 + adhE OKGIIK_07710 0.61 +1.1 1,706,812 + adhE OKGIIK_07710 0.61 -0.3 1,706,812 + adhE OKGIIK_07710 0.61 +0.1 1,706,812 + adhE OKGIIK_07710 0.61 -2.3 1,706,812 + adhE OKGIIK_07710 0.61 +1.1 1,706,813 - adhE OKGIIK_07710 0.61 -0.6 1,706,813 - adhE OKGIIK_07710 0.61 -0.9 1,706,813 - adhE OKGIIK_07710 0.61 +0.1 1,706,813 - adhE OKGIIK_07710 0.61 +0.5 1,706,813 - adhE OKGIIK_07710 0.61 +0.5 1,706,813 - adhE OKGIIK_07710 0.61 +0.2 1,706,813 - adhE OKGIIK_07710 0.61 +0.3 1,706,813 - adhE OKGIIK_07710 0.61 -2.2 1,706,813 - adhE OKGIIK_07710 0.61 -0.3 1,706,813 - adhE OKGIIK_07710 0.61 -0.5 1,706,813 - adhE OKGIIK_07710 0.61 -0.9 1,706,813 - adhE OKGIIK_07710 0.61 -0.3 1,706,813 - adhE OKGIIK_07710 0.61 -0.8 1,706,830 + adhE OKGIIK_07710 0.62 -1.8 1,706,830 + adhE OKGIIK_07710 0.62 -0.8 1,706,830 + adhE OKGIIK_07710 0.62 +1.8 1,706,831 - adhE OKGIIK_07710 0.62 -0.4 1,706,831 - adhE OKGIIK_07710 0.62 -0.3 1,706,831 - adhE OKGIIK_07710 0.62 +1.6 1,707,151 + adhE OKGIIK_07710 0.84 -0.4 1,707,319 + +0.9 1,707,448 + +0.7 1,707,448 + +0.3 1,707,448 + +0.3 1,707,448 + +0.1 1,707,448 + -0.7 1,707,448 + -0.3 1,707,448 + -1.8 1,707,449 - +0.7 1,707,449 - +0.1 1,707,449 - -0.3 1,707,449 - -0.6 1,707,449 - -0.5 1,707,496 + -0.9 1,707,496 + +1.1 1,707,496 + -1.5 1,707,497 - -0.3 1,707,497 - -0.5 1,707,523 + -0.6 1,707,523 + +0.1 1,707,523 + -0.3 1,707,523 + +1.3 1,707,523 + -0.7 1,707,523 + -0.8 1,707,523 + -0.7 1,707,524 - OKGIIK_07715 0.10 -0.2 1,707,524 - OKGIIK_07715 0.10 +1.3 1,707,524 - OKGIIK_07715 0.10 +1.2 1,707,524 - OKGIIK_07715 0.10 +0.1 1,707,524 - OKGIIK_07715 0.10 +1.4 1,707,524 - OKGIIK_07715 0.10 +0.2 1,707,524 - OKGIIK_07715 0.10 -0.5 1,707,559 + OKGIIK_07715 0.15 +0.0 1,707,560 - OKGIIK_07715 0.15 +0.9 1,707,560 - OKGIIK_07715 0.15 +0.1 1,707,560 - OKGIIK_07715 0.15 -0.7 1,707,560 - OKGIIK_07715 0.15 -0.1 1,707,595 + OKGIIK_07715 0.19 +1.5 1,707,595 + OKGIIK_07715 0.19 +2.1 1,707,595 + OKGIIK_07715 0.19 -0.6 1,707,595 + OKGIIK_07715 0.19 -0.5 1,707,595 + OKGIIK_07715 0.19 +0.5 1,707,595 + OKGIIK_07715 0.19 -0.5 1,707,595 + OKGIIK_07715 0.19 +0.5 1,707,595 + OKGIIK_07715 0.19 +2.1 1,707,596 - OKGIIK_07715 0.19 -0.5 1,707,640 + OKGIIK_07715 0.25 +1.3 1,707,640 + OKGIIK_07715 0.25 -0.0 1,707,640 + OKGIIK_07715 0.25 +0.1 1,707,640 + OKGIIK_07715 0.25 -1.6 1,707,640 + OKGIIK_07715 0.25 -0.9 1,707,640 + OKGIIK_07715 0.25 -0.5 1,707,640 + OKGIIK_07715 0.25 +0.3 1,707,640 + OKGIIK_07715 0.25 +0.1 1,707,640 + OKGIIK_07715 0.25 +1.1 1,707,641 - OKGIIK_07715 0.25 +1.9 1,707,641 - OKGIIK_07715 0.25 +0.1 1,707,641 - OKGIIK_07715 0.25 -0.0 1,707,641 - OKGIIK_07715 0.25 -0.7 1,707,641 - OKGIIK_07715 0.25 +0.5 1,707,641 - OKGIIK_07715 0.25 -1.3 1,707,641 - OKGIIK_07715 0.25 -0.3 1,707,700 + OKGIIK_07715 0.33 -0.3 1,707,700 + OKGIIK_07715 0.33 -0.9 1,707,701 - OKGIIK_07715 0.33 +0.7 1,707,701 - OKGIIK_07715 0.33 +0.4 1,707,701 - OKGIIK_07715 0.33 -1.9 1,707,701 - OKGIIK_07715 0.33 +0.1 1,707,743 + OKGIIK_07715 0.39 -1.4 1,707,743 + OKGIIK_07715 0.39 -0.7 1,707,743 + OKGIIK_07715 0.39 +0.9 1,707,743 + OKGIIK_07715 0.39 -0.3 1,707,743 + OKGIIK_07715 0.39 +0.3 1,707,743 + OKGIIK_07715 0.39 -0.6 1,707,743 + OKGIIK_07715 0.39 -0.9 1,707,743 + OKGIIK_07715 0.39 -1.7 1,707,743 + OKGIIK_07715 0.39 -0.9 1,707,743 + OKGIIK_07715 0.39 -0.7 1,707,744 - OKGIIK_07715 0.39 -1.6 1,707,744 - OKGIIK_07715 0.39 +0.1 1,707,744 - OKGIIK_07715 0.39 -0.8 1,707,744 - OKGIIK_07715 0.39 -1.5 1,707,744 - OKGIIK_07715 0.39 -0.5 1,707,744 - OKGIIK_07715 0.39 -0.5 1,707,744 - OKGIIK_07715 0.39 +0.3 1,707,744 - OKGIIK_07715 0.39 +1.0 1,707,744 - OKGIIK_07715 0.39 +0.5 1,707,744 - OKGIIK_07715 0.39 -1.4 1,707,744 - OKGIIK_07715 0.39 -0.3 1,707,744 - OKGIIK_07715 0.39 -0.3 1,707,811 + OKGIIK_07715 0.48 +0.5 1,707,904 + OKGIIK_07715 0.60 -0.0 1,707,978 + OKGIIK_07715 0.69 -0.5 1,707,978 + OKGIIK_07715 0.69 -0.7 1,707,979 - OKGIIK_07715 0.70 -0.7 1,708,046 - OKGIIK_07715 0.78 +1.3 1,708,248 + +0.4 1,708,248 + +0.7 1,708,248 + -0.7 1,708,296 - +2.9 1,708,377 - -1.0 1,708,377 - +0.7 1,708,380 + +1.8 1,708,380 + -1.3 1,708,380 + +1.1 1,708,381 - -0.3 1,708,381 - +2.1 1,708,464 + +0.5 1,708,464 + -0.2 1,708,464 + +0.1 1,708,464 + +1.4 1,708,464 + -0.7 1,708,464 + +0.2 1,708,464 + -1.0 1,708,464 + +1.3 1,708,465 - -0.8 1,708,465 - +0.7 1,708,465 - -1.2 1,708,465 - -0.7 1,708,465 - -1.4 1,708,465 - +0.3 1,708,854 + OKGIIK_07720 0.37 -1.1 1,708,854 + OKGIIK_07720 0.37 -0.7 1,708,854 + OKGIIK_07720 0.37 +1.0 1,708,854 + OKGIIK_07720 0.37 -0.7 1,708,855 - OKGIIK_07720 0.37 -0.0 1,708,855 - OKGIIK_07720 0.37 +0.5 1,708,855 - OKGIIK_07720 0.37 -1.3 1,708,855 - OKGIIK_07720 0.37 -1.8 1,708,896 + OKGIIK_07720 0.40 -1.4 1,708,896 + OKGIIK_07720 0.40 +0.8 1,708,897 - OKGIIK_07720 0.40 -0.5 1,708,897 - OKGIIK_07720 0.40 +0.1 1,708,897 - OKGIIK_07720 0.40 -0.7 1,708,897 - OKGIIK_07720 0.40 -0.7 1,708,897 - OKGIIK_07720 0.40 +0.5 1,708,897 - OKGIIK_07720 0.40 -2.1 1,708,914 + OKGIIK_07720 0.41 -1.1 1,708,914 + OKGIIK_07720 0.41 -1.3 1,708,914 + OKGIIK_07720 0.41 +0.6 1,708,915 - OKGIIK_07720 0.41 -1.8 1,708,915 - OKGIIK_07720 0.41 +1.3 1,708,915 - OKGIIK_07720 0.41 +1.1 1,708,915 - OKGIIK_07720 0.41 +0.3 1,708,915 - OKGIIK_07720 0.41 +0.5 1,708,915 - OKGIIK_07720 0.41 +0.6 1,708,915 - OKGIIK_07720 0.41 +1.1 1,708,915 - OKGIIK_07720 0.41 +0.3 1,708,915 - OKGIIK_07720 0.41 +1.1 1,708,915 - OKGIIK_07720 0.41 +0.3 1,708,915 - OKGIIK_07720 0.41 -1.1 1,709,170 - OKGIIK_07720 0.59 -0.9 1,709,170 - OKGIIK_07720 0.59 -0.7
Or see this region's nucleotide sequence