Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05970

Experiment: R2A_PIPES pH 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES pH 4
1,310,562	+	cysI	OKGIIK_05965	0.45	+0.1
1,310,562	+	cysI	OKGIIK_05965	0.45	+0.3
1,310,563	-	cysI	OKGIIK_05965	0.45	+0.7
1,310,563	-	cysI	OKGIIK_05965	0.45	+0.1
1,310,688	+	cysI	OKGIIK_05965	0.53	-0.9
1,310,688	+	cysI	OKGIIK_05965	0.53	+0.2
1,310,688	+	cysI	OKGIIK_05965	0.53	-0.5
1,310,688	+	cysI	OKGIIK_05965	0.53	+0.3
1,310,689	-	cysI	OKGIIK_05965	0.53	-0.5
1,310,689	-	cysI	OKGIIK_05965	0.53	+1.3
1,310,689	-	cysI	OKGIIK_05965	0.53	-0.1
1,310,837	+	cysI	OKGIIK_05965	0.62	-0.1
1,310,837	+	cysI	OKGIIK_05965	0.62	-0.3
1,310,838	-	cysI	OKGIIK_05965	0.62	-0.5
1,310,838	-	cysI	OKGIIK_05965	0.62	+1.1
1,310,846	+	cysI	OKGIIK_05965	0.62	-1.7
1,311,117	+	cysI	OKGIIK_05965	0.78	-1.1
1,311,117	+	cysI	OKGIIK_05965	0.78	-1.7
1,311,117	+	cysI	OKGIIK_05965	0.78	+0.1
1,311,118	-	cysI	OKGIIK_05965	0.78	+0.7
1,311,118	-	cysI	OKGIIK_05965	0.78	+0.7
1,311,229	-	cysI	OKGIIK_05965	0.85	-0.3
1,311,229	-	cysI	OKGIIK_05965	0.85	+0.4
1,311,382	-				+0.1
1,311,728	+	cysH	OKGIIK_05970	0.34	-1.6
1,311,728	+	cysH	OKGIIK_05970	0.34	-0.2
1,311,728	+	cysH	OKGIIK_05970	0.34	-0.7
1,311,728	+	cysH	OKGIIK_05970	0.34	-0.5
1,311,728	+	cysH	OKGIIK_05970	0.34	-0.9
1,311,728	+	cysH	OKGIIK_05970	0.34	-0.7
1,311,728	+	cysH	OKGIIK_05970	0.34	+0.3
1,311,728	+	cysH	OKGIIK_05970	0.34	+0.3
1,311,728	+	cysH	OKGIIK_05970	0.34	+0.6
1,311,729	-	cysH	OKGIIK_05970	0.34	-0.9
1,311,729	-	cysH	OKGIIK_05970	0.34	-1.4
1,311,729	-	cysH	OKGIIK_05970	0.34	-0.4
1,311,729	-	cysH	OKGIIK_05970	0.34	-1.8
1,311,729	-	cysH	OKGIIK_05970	0.34	-0.1
1,311,729	-	cysH	OKGIIK_05970	0.34	-0.7
1,311,779	+	cysH	OKGIIK_05970	0.41	+0.7
1,311,779	+	cysH	OKGIIK_05970	0.41	-0.4
1,311,779	+	cysH	OKGIIK_05970	0.41	-0.9
1,311,779	+	cysH	OKGIIK_05970	0.41	-0.1
1,311,779	+	cysH	OKGIIK_05970	0.41	-0.5
1,311,779	+	cysH	OKGIIK_05970	0.41	-0.9
1,311,779	+	cysH	OKGIIK_05970	0.41	-0.3
1,311,779	+	cysH	OKGIIK_05970	0.41	+0.1
1,311,779	+	cysH	OKGIIK_05970	0.41	-0.3
1,311,780	-	cysH	OKGIIK_05970	0.41	+2.4
1,311,780	-	cysH	OKGIIK_05970	0.41	+0.7
1,311,780	-	cysH	OKGIIK_05970	0.41	-1.9
1,311,780	-	cysH	OKGIIK_05970	0.41	-0.5
1,311,780	-	cysH	OKGIIK_05970	0.41	-1.3
1,311,780	-	cysH	OKGIIK_05970	0.41	-1.3
1,311,780	-	cysH	OKGIIK_05970	0.41	+0.8
1,311,860	+	cysH	OKGIIK_05970	0.52	-1.1
1,311,860	+	cysH	OKGIIK_05970	0.52	+0.7
1,311,861	-	cysH	OKGIIK_05970	0.52	-0.8
1,312,046	+	cysH	OKGIIK_05970	0.78	-0.4
1,312,046	+	cysH	OKGIIK_05970	0.78	+0.3
1,312,070	+	cysH	OKGIIK_05970	0.81	-0.6
1,312,071	-	cysH	OKGIIK_05970	0.81	+0.5
1,312,094	+	cysH	OKGIIK_05970	0.84	+0.3
1,312,094	+	cysH	OKGIIK_05970	0.84	-0.4
1,312,094	+	cysH	OKGIIK_05970	0.84	+0.5
1,312,094	+	cysH	OKGIIK_05970	0.84	+0.5
1,312,094	+	cysH	OKGIIK_05970	0.84	+0.1
1,312,094	+	cysH	OKGIIK_05970	0.84	-0.7
1,312,094	+	cysH	OKGIIK_05970	0.84	-0.7
1,312,094	+	cysH	OKGIIK_05970	0.84	-0.9
1,312,094	+	cysH	OKGIIK_05970	0.84	-1.8
1,312,094	+	cysH	OKGIIK_05970	0.84	+0.1
1,312,095	-	cysH	OKGIIK_05970	0.84	+0.1
1,312,095	-	cysH	OKGIIK_05970	0.84	-1.5
1,312,095	-	cysH	OKGIIK_05970	0.84	-0.9
1,312,205	+				-0.4
1,312,414	+	lysR	OKGIIK_05975	0.15	-1.0
1,312,414	+	lysR	OKGIIK_05975	0.15	+0.4
1,312,414	+	lysR	OKGIIK_05975	0.15	+1.3
1,312,414	+	lysR	OKGIIK_05975	0.15	-1.7
1,312,414	+	lysR	OKGIIK_05975	0.15	-0.4
1,312,414	+	lysR	OKGIIK_05975	0.15	-1.2
1,312,414	+	lysR	OKGIIK_05975	0.15	+1.1
1,312,414	+	lysR	OKGIIK_05975	0.15	+0.1
1,312,414	+	lysR	OKGIIK_05975	0.15	-0.1
1,312,414	+	lysR	OKGIIK_05975	0.15	-0.5
1,312,414	+	lysR	OKGIIK_05975	0.15	+0.5
1,312,415	-	lysR	OKGIIK_05975	0.15	-0.7
1,312,415	-	lysR	OKGIIK_05975	0.15	+0.1
1,312,561	+	lysR	OKGIIK_05975	0.30	+1.1
1,312,561	+	lysR	OKGIIK_05975	0.30	+0.1
1,312,561	+	lysR	OKGIIK_05975	0.30	-0.3
1,312,561	+	lysR	OKGIIK_05975	0.30	-0.5
1,312,561	+	lysR	OKGIIK_05975	0.30	-0.5
1,312,561	+	lysR	OKGIIK_05975	0.30	+1.0
1,312,561	+	lysR	OKGIIK_05975	0.30	+0.4
1,312,561	+	lysR	OKGIIK_05975	0.30	+0.4
1,312,561	+	lysR	OKGIIK_05975	0.30	+0.2
1,312,561	+	lysR	OKGIIK_05975	0.30	+1.6
1,312,561	+	lysR	OKGIIK_05975	0.30	-2.1
1,312,561	+	lysR	OKGIIK_05975	0.30	-0.1
1,312,561	+	lysR	OKGIIK_05975	0.30	-0.3
1,312,562	-	lysR	OKGIIK_05975	0.30	-1.0
1,312,562	-	lysR	OKGIIK_05975	0.30	-0.5
1,312,562	-	lysR	OKGIIK_05975	0.30	+1.8
1,312,562	-	lysR	OKGIIK_05975	0.30	+0.8
1,312,562	-	lysR	OKGIIK_05975	0.30	+0.3
1,312,562	-	lysR	OKGIIK_05975	0.30	+1.7
1,312,562	-	lysR	OKGIIK_05975	0.30	-2.0
1,312,562	-	lysR	OKGIIK_05975	0.30	+1.8
1,312,562	-	lysR	OKGIIK_05975	0.30	+0.7
1,312,562	-	lysR	OKGIIK_05975	0.30	-0.7
1,312,562	-	lysR	OKGIIK_05975	0.30	+0.3
1,312,562	-	lysR	OKGIIK_05975	0.30	-0.9
1,312,562	-	lysR	OKGIIK_05975	0.30	+0.3
1,312,669	+	lysR	OKGIIK_05975	0.40	-0.2
1,312,669	+	lysR	OKGIIK_05975	0.40	-0.7
1,312,669	+	lysR	OKGIIK_05975	0.40	-0.9
1,312,670	-	lysR	OKGIIK_05975	0.41	+0.2
1,312,670	-	lysR	OKGIIK_05975	0.41	-0.7
1,312,670	-	lysR	OKGIIK_05975	0.41	-0.2
1,312,670	-	lysR	OKGIIK_05975	0.41	+1.0
1,312,670	-	lysR	OKGIIK_05975	0.41	+1.7
1,312,906	+	lysR	OKGIIK_05975	0.64	+0.7
1,312,906	+	lysR	OKGIIK_05975	0.64	+0.9
1,312,907	-	lysR	OKGIIK_05975	0.64	+2.1
1,312,907	-	lysR	OKGIIK_05975	0.64	-1.3