Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05605

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_05595 and Pro_trna are separated by 174 nucleotidesPro_trna and hisS are separated by 166 nucleotideshisS and hutH are separated by 62 nucleotides OKGIIK_05595: OKGIIK_05595 - hypothetical protein, at 1,234,472 to 1,235,023 _05595 OKGIIK_05600: Pro_trna - tRNA-Pro, at 1,235,198 to 1,235,274 _trna OKGIIK_05605: hisS - histidine--tRNA ligase, at 1,235,441 to 1,236,820 hisS OKGIIK_05610: hutH - histidine ammonia-lyase, at 1,236,883 to 1,238,784 hutH Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -2 -1 0 1 2at 1234.469 kb on + strandat 1234.509 kb on - strandat 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.535 kb on + strand, within OKGIIK_05595at 1234.536 kb on - strand, within OKGIIK_05595at 1234.536 kb on - strand, within OKGIIK_05595at 1234.536 kb on - strand, within OKGIIK_05595at 1234.538 kb on + strand, within OKGIIK_05595at 1234.538 kb on + strand, within OKGIIK_05595at 1234.539 kb on - strand, within OKGIIK_05595at 1234.539 kb on - strand, within OKGIIK_05595at 1234.623 kb on - strand, within OKGIIK_05595at 1234.896 kb on - strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.916 kb on + strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1234.917 kb on - strand, within OKGIIK_05595at 1235.048 kb on + strandat 1235.048 kb on + strandat 1235.048 kb on + strandat 1235.048 kb on + strandat 1235.049 kb on - strandat 1235.049 kb on - strandat 1235.049 kb on - strandat 1235.049 kb on - strandat 1235.049 kb on - strandat 1235.049 kb on - strandat 1235.049 kb on - strandat 1235.109 kb on - strandat 1235.109 kb on - strandat 1235.325 kb on - strandat 1235.325 kb on - strandat 1235.325 kb on - strandat 1235.372 kb on + strandat 1236.897 kb on + strandat 1236.897 kb on + strandat 1237.051 kb on + strandat 1237.051 kb on + strandat 1237.051 kb on + strandat 1237.052 kb on - strandat 1237.052 kb on - strandat 1237.199 kb on + strand, within hutHat 1237.199 kb on + strand, within hutHat 1237.199 kb on + strand, within hutHat 1237.199 kb on + strand, within hutHat 1237.199 kb on + strand, within hutHat 1237.200 kb on - strand, within hutHat 1237.200 kb on - strand, within hutHat 1237.435 kb on + strand, within hutHat 1237.436 kb on - strand, within hutHat 1237.436 kb on - strand, within hutHat 1237.436 kb on - strand, within hutHat 1237.753 kb on + strand, within hutHat 1237.753 kb on + strand, within hutHat 1237.754 kb on - strand, within hutHat 1237.754 kb on - strand, within hutH

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,234,469 + -1.9
1,234,509 - -0.3
1,234,535 + OKGIIK_05595 0.11 -0.5
1,234,535 + OKGIIK_05595 0.11 -0.8
1,234,535 + OKGIIK_05595 0.11 +0.4
1,234,535 + OKGIIK_05595 0.11 -0.3
1,234,535 + OKGIIK_05595 0.11 +0.9
1,234,535 + OKGIIK_05595 0.11 +0.2
1,234,535 + OKGIIK_05595 0.11 -1.1
1,234,535 + OKGIIK_05595 0.11 -0.8
1,234,535 + OKGIIK_05595 0.11 -0.3
1,234,535 + OKGIIK_05595 0.11 +1.0
1,234,536 - OKGIIK_05595 0.12 -0.9
1,234,536 - OKGIIK_05595 0.12 +0.0
1,234,536 - OKGIIK_05595 0.12 -0.8
1,234,538 + OKGIIK_05595 0.12 -1.0
1,234,538 + OKGIIK_05595 0.12 +0.0
1,234,539 - OKGIIK_05595 0.12 -1.3
1,234,539 - OKGIIK_05595 0.12 +0.8
1,234,623 - OKGIIK_05595 0.27 +0.9
1,234,896 - OKGIIK_05595 0.77 -0.5
1,234,916 + OKGIIK_05595 0.80 +1.0
1,234,916 + OKGIIK_05595 0.80 +0.1
1,234,916 + OKGIIK_05595 0.80 +0.9
1,234,916 + OKGIIK_05595 0.80 +0.0
1,234,916 + OKGIIK_05595 0.80 -1.1
1,234,916 + OKGIIK_05595 0.80 +0.2
1,234,916 + OKGIIK_05595 0.80 -1.1
1,234,916 + OKGIIK_05595 0.80 +1.7
1,234,916 + OKGIIK_05595 0.80 -0.9
1,234,916 + OKGIIK_05595 0.80 -1.1
1,234,916 + OKGIIK_05595 0.80 -1.7
1,234,916 + OKGIIK_05595 0.80 +0.5
1,234,917 - OKGIIK_05595 0.81 -0.5
1,234,917 - OKGIIK_05595 0.81 +0.0
1,234,917 - OKGIIK_05595 0.81 +0.0
1,234,917 - OKGIIK_05595 0.81 +0.2
1,234,917 - OKGIIK_05595 0.81 -2.1
1,234,917 - OKGIIK_05595 0.81 +1.2
1,234,917 - OKGIIK_05595 0.81 +0.9
1,234,917 - OKGIIK_05595 0.81 +1.0
1,234,917 - OKGIIK_05595 0.81 +1.7
1,235,048 + +1.0
1,235,048 + -0.5
1,235,048 + -0.8
1,235,048 + -1.3
1,235,049 - +1.6
1,235,049 - -0.4
1,235,049 - -0.3
1,235,049 - +0.0
1,235,049 - -0.4
1,235,049 - -0.7
1,235,049 - -0.5
1,235,109 - -0.1
1,235,109 - -0.0
1,235,325 - -1.8
1,235,325 - +0.4
1,235,325 - -1.7
1,235,372 + +0.5
1,236,897 + +0.0
1,236,897 + +1.0
1,237,051 + -0.4
1,237,051 + +2.6
1,237,051 + +1.0
1,237,052 - -0.5
1,237,052 - +0.4
1,237,199 + hutH OKGIIK_05610 0.17 +0.2
1,237,199 + hutH OKGIIK_05610 0.17 -1.3
1,237,199 + hutH OKGIIK_05610 0.17 -0.3
1,237,199 + hutH OKGIIK_05610 0.17 -2.1
1,237,199 + hutH OKGIIK_05610 0.17 -0.9
1,237,200 - hutH OKGIIK_05610 0.17 +0.9
1,237,200 - hutH OKGIIK_05610 0.17 +0.1
1,237,435 + hutH OKGIIK_05610 0.29 -1.5
1,237,436 - hutH OKGIIK_05610 0.29 +0.3
1,237,436 - hutH OKGIIK_05610 0.29 -0.3
1,237,436 - hutH OKGIIK_05610 0.29 +0.6
1,237,753 + hutH OKGIIK_05610 0.46 +0.5
1,237,753 + hutH OKGIIK_05610 0.46 +0.3
1,237,754 - hutH OKGIIK_05610 0.46 +1.2
1,237,754 - hutH OKGIIK_05610 0.46 +0.0

Or see this region's nucleotide sequence