Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05550

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_05545 and OKGIIK_05550 are separated by 96 nucleotidesOKGIIK_05550 and folC are separated by 100 nucleotides OKGIIK_05545: OKGIIK_05545 - Cation transporter, at 1,218,481 to 1,221,066 _05545 OKGIIK_05550: OKGIIK_05550 - hypothetical protein, at 1,221,163 to 1,221,327 _05550 OKGIIK_05555: folC - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 1,221,428 to 1,222,717 folC Position (kb) 1221 1222Strain fitness (log2 ratio) -2 -1 0 1 2at 1220.461 kb on + strand, within OKGIIK_05545at 1220.917 kb on + strandat 1220.917 kb on + strandat 1220.917 kb on + strandat 1220.917 kb on + strandat 1220.917 kb on + strandat 1220.917 kb on + strandat 1220.917 kb on + strandat 1220.917 kb on + strandat 1220.917 kb on + strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.918 kb on - strandat 1220.956 kb on + strandat 1220.956 kb on + strandat 1220.956 kb on + strandat 1220.956 kb on + strandat 1220.956 kb on + strandat 1220.956 kb on + strandat 1220.957 kb on - strandat 1220.957 kb on - strandat 1220.957 kb on - strandat 1221.202 kb on + strand, within OKGIIK_05550at 1221.202 kb on + strand, within OKGIIK_05550at 1221.202 kb on + strand, within OKGIIK_05550at 1221.203 kb on - strand, within OKGIIK_05550at 1221.218 kb on + strand, within OKGIIK_05550at 1221.218 kb on + strand, within OKGIIK_05550at 1221.218 kb on + strand, within OKGIIK_05550at 1221.219 kb on - strand, within OKGIIK_05550at 1221.219 kb on - strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.286 kb on + strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.287 kb on - strand, within OKGIIK_05550at 1221.301 kb on + strand, within OKGIIK_05550at 1221.301 kb on + strand, within OKGIIK_05550

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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1,220,461 + OKGIIK_05545 0.77 +0.4
1,220,917 + -1.0
1,220,917 + -0.3
1,220,917 + -0.5
1,220,917 + +0.7
1,220,917 + -0.5
1,220,917 + -0.8
1,220,917 + +1.0
1,220,917 + +1.0
1,220,917 + +0.2
1,220,918 - +0.8
1,220,918 - +0.0
1,220,918 - +0.5
1,220,918 - -1.0
1,220,918 - -0.3
1,220,918 - +0.0
1,220,918 - +0.6
1,220,918 - -2.4
1,220,918 - +0.0
1,220,918 - -0.1
1,220,918 - -0.1
1,220,956 + +0.2
1,220,956 + -0.1
1,220,956 + +0.1
1,220,956 + +0.0
1,220,956 + -1.8
1,220,956 + +0.4
1,220,957 - -0.0
1,220,957 - +0.0
1,220,957 - -0.2
1,221,202 + OKGIIK_05550 0.24 +1.0
1,221,202 + OKGIIK_05550 0.24 -1.1
1,221,202 + OKGIIK_05550 0.24 -1.8
1,221,203 - OKGIIK_05550 0.24 +1.5
1,221,218 + OKGIIK_05550 0.33 +1.8
1,221,218 + OKGIIK_05550 0.33 -1.9
1,221,218 + OKGIIK_05550 0.33 +0.4
1,221,219 - OKGIIK_05550 0.34 +0.7
1,221,219 - OKGIIK_05550 0.34 +0.2
1,221,286 + OKGIIK_05550 0.75 -1.1
1,221,286 + OKGIIK_05550 0.75 +0.0
1,221,286 + OKGIIK_05550 0.75 +0.2
1,221,286 + OKGIIK_05550 0.75 -1.3
1,221,286 + OKGIIK_05550 0.75 +0.9
1,221,286 + OKGIIK_05550 0.75 +2.0
1,221,286 + OKGIIK_05550 0.75 -2.0
1,221,286 + OKGIIK_05550 0.75 -0.2
1,221,286 + OKGIIK_05550 0.75 +0.6
1,221,286 + OKGIIK_05550 0.75 -0.1
1,221,286 + OKGIIK_05550 0.75 -1.3
1,221,286 + OKGIIK_05550 0.75 +1.6
1,221,286 + OKGIIK_05550 0.75 -0.8
1,221,286 + OKGIIK_05550 0.75 -1.1
1,221,286 + OKGIIK_05550 0.75 +1.7
1,221,286 + OKGIIK_05550 0.75 -0.5
1,221,286 + OKGIIK_05550 0.75 +0.7
1,221,286 + OKGIIK_05550 0.75 -0.3
1,221,286 + OKGIIK_05550 0.75 +0.6
1,221,286 + OKGIIK_05550 0.75 +0.7
1,221,286 + OKGIIK_05550 0.75 -1.2
1,221,286 + OKGIIK_05550 0.75 -0.5
1,221,286 + OKGIIK_05550 0.75 +1.0
1,221,286 + OKGIIK_05550 0.75 -0.5
1,221,286 + OKGIIK_05550 0.75 -0.5
1,221,286 + OKGIIK_05550 0.75 +0.9
1,221,286 + OKGIIK_05550 0.75 -0.5
1,221,286 + OKGIIK_05550 0.75 -0.4
1,221,287 - OKGIIK_05550 0.75 -0.7
1,221,287 - OKGIIK_05550 0.75 +0.0
1,221,287 - OKGIIK_05550 0.75 +0.8
1,221,287 - OKGIIK_05550 0.75 -0.8
1,221,287 - OKGIIK_05550 0.75 -0.0
1,221,287 - OKGIIK_05550 0.75 -2.1
1,221,287 - OKGIIK_05550 0.75 -1.0
1,221,287 - OKGIIK_05550 0.75 +0.6
1,221,287 - OKGIIK_05550 0.75 +0.9
1,221,287 - OKGIIK_05550 0.75 -1.4
1,221,287 - OKGIIK_05550 0.75 -0.5
1,221,287 - OKGIIK_05550 0.75 +0.2
1,221,287 - OKGIIK_05550 0.75 +0.2
1,221,287 - OKGIIK_05550 0.75 +1.4
1,221,287 - OKGIIK_05550 0.75 -0.4
1,221,287 - OKGIIK_05550 0.75 -0.7
1,221,287 - OKGIIK_05550 0.75 +0.5
1,221,301 + OKGIIK_05550 0.84 -0.3
1,221,301 + OKGIIK_05550 0.84 -0.8

Or see this region's nucleotide sequence