Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sbm and OKGIIK_04080 are separated by 261 nucleotides OKGIIK_04080 and OKGIIK_04085 are separated by 55 nucleotides OKGIIK_04085 and OKGIIK_04090 are separated by 141 nucleotides OKGIIK_04090 and OKGIIK_04095 are separated by 9 nucleotides
OKGIIK_04075: sbm - methylmalonyl-CoA mutase, at 892,008 to 895,568
sbm
OKGIIK_04080: OKGIIK_04080 - DUF2442 domain-containing protein, at 895,830 to 896,099
_04080
OKGIIK_04085: OKGIIK_04085 - hypothetical protein, at 896,155 to 896,352
_04085
OKGIIK_04090: OKGIIK_04090 - hypothetical protein, at 896,494 to 897,225
_04090
OKGIIK_04095: OKGIIK_04095 - hypothetical protein, at 897,235 to 899,517
_04095
Position (kb) 896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.209 kb on + strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.210 kb on - strand, within sbm at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.242 kb on + strand at 895.243 kb on - strand at 895.243 kb on - strand at 895.243 kb on - strand at 895.243 kb on - strand at 895.245 kb on + strand at 895.245 kb on + strand at 895.245 kb on + strand at 895.246 kb on - strand at 895.246 kb on - strand at 895.246 kb on - strand at 895.246 kb on - strand at 895.292 kb on + strand at 895.292 kb on + strand at 895.292 kb on + strand at 895.292 kb on + strand at 895.292 kb on + strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.293 kb on - strand at 895.427 kb on + strand at 895.427 kb on + strand at 895.427 kb on + strand at 895.427 kb on + strand at 895.428 kb on - strand at 895.428 kb on - strand at 895.428 kb on - strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.533 kb on + strand at 895.534 kb on - strand at 895.534 kb on - strand at 895.552 kb on - strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.566 kb on + strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.567 kb on - strand at 895.598 kb on + strand at 895.598 kb on + strand at 895.598 kb on + strand at 895.599 kb on - strand at 895.599 kb on - strand at 895.599 kb on - strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.602 kb on + strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.603 kb on - strand at 895.614 kb on + strand at 895.614 kb on + strand at 895.614 kb on + strand at 895.614 kb on + strand at 895.614 kb on + strand at 895.615 kb on - strand at 895.615 kb on - strand at 895.615 kb on - strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.642 kb on + strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.643 kb on - strand at 895.653 kb on + strand at 895.653 kb on + strand at 895.653 kb on + strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.654 kb on - strand at 895.835 kb on + strand at 895.835 kb on + strand at 895.835 kb on + strand at 895.835 kb on + strand at 895.835 kb on + strand at 895.836 kb on - strand at 895.836 kb on - strand at 895.836 kb on - strand at 895.836 kb on - strand at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.046 kb on + strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.047 kb on - strand, within OKGIIK_04080 at 896.101 kb on + strand at 896.101 kb on + strand at 896.101 kb on + strand at 896.101 kb on + strand at 896.101 kb on + strand at 896.102 kb on - strand at 896.102 kb on - strand at 896.102 kb on - strand at 896.121 kb on + strand at 896.121 kb on + strand at 896.121 kb on + strand at 896.122 kb on - strand at 896.122 kb on - strand at 896.122 kb on - strand at 896.122 kb on - strand at 896.161 kb on + strand at 896.161 kb on + strand at 896.161 kb on + strand at 896.162 kb on - strand at 896.197 kb on - strand, within OKGIIK_04085 at 896.197 kb on - strand, within OKGIIK_04085 at 896.306 kb on + strand, within OKGIIK_04085 at 896.341 kb on + strand at 896.341 kb on + strand at 896.341 kb on + strand at 896.341 kb on + strand at 896.341 kb on + strand at 896.341 kb on + strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.342 kb on - strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.343 kb on + strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.344 kb on - strand at 896.396 kb on - strand at 896.443 kb on + strand at 896.452 kb on - strand at 896.461 kb on + strand at 896.463 kb on + strand at 896.465 kb on + strand at 896.465 kb on + strand at 896.465 kb on + strand at 896.466 kb on - strand at 896.469 kb on + strand at 896.502 kb on + strand at 896.502 kb on + strand at 896.503 kb on - strand at 896.558 kb on + strand at 896.612 kb on - strand, within OKGIIK_04090 at 896.622 kb on - strand, within OKGIIK_04090 at 896.633 kb on + strand, within OKGIIK_04090 at 896.634 kb on - strand, within OKGIIK_04090 at 896.634 kb on - strand, within OKGIIK_04090 at 896.634 kb on - strand, within OKGIIK_04090 at 896.635 kb on + strand, within OKGIIK_04090 at 896.635 kb on + strand, within OKGIIK_04090 at 896.636 kb on - strand, within OKGIIK_04090 at 896.684 kb on + strand, within OKGIIK_04090 at 896.685 kb on - strand, within OKGIIK_04090 at 896.695 kb on - strand, within OKGIIK_04090 at 896.895 kb on + strand, within OKGIIK_04090 at 896.896 kb on - strand, within OKGIIK_04090 at 896.896 kb on - strand, within OKGIIK_04090 at 896.916 kb on + strand, within OKGIIK_04090 at 896.961 kb on - strand, within OKGIIK_04090 at 897.026 kb on - strand, within OKGIIK_04090 at 897.027 kb on + strand, within OKGIIK_04090 at 897.028 kb on - strand, within OKGIIK_04090 at 897.028 kb on - strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.121 kb on + strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.122 kb on - strand, within OKGIIK_04090 at 897.206 kb on - strand at 897.206 kb on - strand at 897.223 kb on + strand at 897.223 kb on + strand at 897.224 kb on - strand at 897.224 kb on - strand at 897.224 kb on - strand at 897.224 kb on - strand at 897.224 kb on - strand at 897.230 kb on + strand at 897.231 kb on - strand at 897.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 895,209 + sbm OKGIIK_04075 0.90 -0.6 895,209 + sbm OKGIIK_04075 0.90 +2.1 895,209 + sbm OKGIIK_04075 0.90 -0.7 895,209 + sbm OKGIIK_04075 0.90 -0.2 895,209 + sbm OKGIIK_04075 0.90 -0.8 895,209 + sbm OKGIIK_04075 0.90 +0.4 895,209 + sbm OKGIIK_04075 0.90 +1.4 895,209 + sbm OKGIIK_04075 0.90 +0.7 895,209 + sbm OKGIIK_04075 0.90 +0.9 895,209 + sbm OKGIIK_04075 0.90 -0.3 895,209 + sbm OKGIIK_04075 0.90 +2.4 895,210 - sbm OKGIIK_04075 0.90 -0.9 895,210 - sbm OKGIIK_04075 0.90 +1.7 895,210 - sbm OKGIIK_04075 0.90 -0.9 895,210 - sbm OKGIIK_04075 0.90 -1.2 895,210 - sbm OKGIIK_04075 0.90 -0.5 895,210 - sbm OKGIIK_04075 0.90 +0.3 895,210 - sbm OKGIIK_04075 0.90 -1.4 895,210 - sbm OKGIIK_04075 0.90 +1.7 895,242 + +0.1 895,242 + -0.4 895,242 + -0.0 895,242 + -0.0 895,242 + -1.1 895,242 + +1.6 895,242 + -1.4 895,242 + -0.3 895,242 + +0.8 895,242 + +0.7 895,243 - -1.5 895,243 - -1.9 895,243 - +0.5 895,243 - -0.9 895,245 + +0.1 895,245 + -1.2 895,245 + -1.2 895,246 - -0.5 895,246 - +0.5 895,246 - -0.1 895,246 - +0.6 895,292 + -0.5 895,292 + +0.1 895,292 + -0.2 895,292 + +0.1 895,292 + -0.9 895,293 - +0.6 895,293 - -0.2 895,293 - +1.3 895,293 - -0.5 895,293 - -1.3 895,293 - -0.3 895,427 + +2.3 895,427 + +0.8 895,427 + +1.2 895,427 + -1.5 895,428 - -0.0 895,428 - +2.1 895,428 - -0.1 895,533 + -0.5 895,533 + +0.2 895,533 + +0.2 895,533 + -0.9 895,533 + -0.2 895,533 + +1.3 895,533 + +2.1 895,533 + +1.1 895,534 - -1.7 895,534 - -0.2 895,552 - -0.2 895,566 + -0.4 895,566 + +0.2 895,566 + +0.7 895,566 + -2.0 895,566 + +0.3 895,566 + -0.5 895,566 + -0.5 895,566 + -0.3 895,566 + +0.3 895,566 + +0.5 895,567 - -1.4 895,567 - -1.1 895,567 - -0.9 895,567 - -0.1 895,567 - +0.0 895,567 - +0.7 895,567 - +0.3 895,567 - -0.2 895,567 - -0.6 895,567 - +0.1 895,598 + +1.2 895,598 + +0.8 895,598 + +0.1 895,599 - -0.0 895,599 - +0.9 895,599 - -1.5 895,602 + -0.2 895,602 + -0.7 895,602 + +1.3 895,602 + +0.5 895,602 + +0.3 895,602 + +0.8 895,602 + +0.9 895,602 + -1.1 895,602 + +0.6 895,602 + +0.5 895,602 + +1.1 895,602 + -0.7 895,602 + +0.5 895,602 + -1.1 895,602 + +0.3 895,603 - +0.8 895,603 - -0.9 895,603 - +0.3 895,603 - -0.7 895,603 - +0.3 895,603 - +0.9 895,603 - +0.1 895,603 - +1.2 895,603 - +1.1 895,614 + -0.2 895,614 + -1.4 895,614 + -0.2 895,614 + -0.2 895,614 + +0.8 895,615 - +0.4 895,615 - -1.7 895,615 - -0.2 895,642 + -1.5 895,642 + -0.9 895,642 + +0.1 895,642 + -0.9 895,642 + +0.2 895,642 + +0.1 895,642 + -0.9 895,642 + -1.5 895,643 - +1.3 895,643 - -1.8 895,643 - -0.4 895,643 - +0.3 895,643 - +0.6 895,643 - -1.8 895,643 - -1.2 895,653 + +1.3 895,653 + -1.6 895,653 + -1.9 895,654 - +0.7 895,654 - +1.2 895,654 - -0.5 895,654 - -0.7 895,654 - +1.0 895,654 - -1.2 895,654 - -0.9 895,835 + +1.0 895,835 + +0.1 895,835 + +2.4 895,835 + +0.6 895,835 + -0.3 895,836 - -0.2 895,836 - -0.8 895,836 - -0.6 895,836 - -1.2 896,046 + OKGIIK_04080 0.80 -0.1 896,046 + OKGIIK_04080 0.80 +2.1 896,046 + OKGIIK_04080 0.80 -1.4 896,046 + OKGIIK_04080 0.80 +0.3 896,046 + OKGIIK_04080 0.80 +0.3 896,046 + OKGIIK_04080 0.80 +0.3 896,046 + OKGIIK_04080 0.80 -1.1 896,046 + OKGIIK_04080 0.80 +0.9 896,046 + OKGIIK_04080 0.80 -1.2 896,046 + OKGIIK_04080 0.80 -0.9 896,047 - OKGIIK_04080 0.80 +0.8 896,047 - OKGIIK_04080 0.80 -0.5 896,047 - OKGIIK_04080 0.80 -0.7 896,047 - OKGIIK_04080 0.80 -3.0 896,047 - OKGIIK_04080 0.80 -0.4 896,101 + -0.4 896,101 + +0.1 896,101 + +1.1 896,101 + +0.1 896,101 + +1.3 896,102 - +1.1 896,102 - -1.1 896,102 - +0.1 896,121 + +0.8 896,121 + -0.0 896,121 + -0.5 896,122 - +0.5 896,122 - +1.7 896,122 - -1.5 896,122 - +2.3 896,161 + +0.3 896,161 + -0.9 896,161 + -0.2 896,162 - -0.4 896,197 - OKGIIK_04085 0.21 -0.3 896,197 - OKGIIK_04085 0.21 -1.0 896,306 + OKGIIK_04085 0.76 +0.1 896,341 + -0.8 896,341 + +1.0 896,341 + +0.2 896,341 + -0.4 896,341 + +0.1 896,341 + -2.1 896,342 - -0.1 896,342 - -0.1 896,342 - -0.0 896,342 - +0.7 896,342 - +0.1 896,342 - -0.6 896,342 - +0.2 896,342 - +1.6 896,342 - -0.3 896,342 - -0.2 896,342 - -0.7 896,342 - -0.7 896,342 - -1.1 896,342 - +0.9 896,342 - -1.1 896,342 - +0.9 896,342 - -0.7 896,342 - -1.0 896,342 - +0.6 896,343 + -0.9 896,343 + +1.1 896,343 + -1.1 896,343 + -1.8 896,343 + -0.2 896,343 + -1.2 896,344 - -0.2 896,344 - +0.5 896,344 - +1.3 896,344 - +2.1 896,344 - +1.1 896,344 - +0.5 896,344 - +2.3 896,396 - +1.1 896,443 + -0.2 896,452 - +0.1 896,461 + +1.1 896,463 + +0.4 896,465 + -0.7 896,465 + +0.2 896,465 + -1.7 896,466 - -0.1 896,469 + +1.6 896,502 + -0.5 896,502 + +0.8 896,503 - -0.0 896,558 + -1.4 896,612 - OKGIIK_04090 0.16 +0.7 896,622 - OKGIIK_04090 0.17 +0.5 896,633 + OKGIIK_04090 0.19 -1.1 896,634 - OKGIIK_04090 0.19 +1.6 896,634 - OKGIIK_04090 0.19 +0.1 896,634 - OKGIIK_04090 0.19 +1.6 896,635 + OKGIIK_04090 0.19 -0.4 896,635 + OKGIIK_04090 0.19 +0.1 896,636 - OKGIIK_04090 0.19 -1.4 896,684 + OKGIIK_04090 0.26 +0.5 896,685 - OKGIIK_04090 0.26 -0.2 896,695 - OKGIIK_04090 0.27 -0.4 896,895 + OKGIIK_04090 0.55 -0.6 896,896 - OKGIIK_04090 0.55 -0.5 896,896 - OKGIIK_04090 0.55 -0.4 896,916 + OKGIIK_04090 0.58 -1.2 896,961 - OKGIIK_04090 0.64 -0.8 897,026 - OKGIIK_04090 0.73 -2.2 897,027 + OKGIIK_04090 0.73 +1.3 897,028 - OKGIIK_04090 0.73 +1.5 897,028 - OKGIIK_04090 0.73 -0.9 897,121 + OKGIIK_04090 0.86 +0.5 897,121 + OKGIIK_04090 0.86 -0.8 897,121 + OKGIIK_04090 0.86 -0.3 897,121 + OKGIIK_04090 0.86 +1.7 897,121 + OKGIIK_04090 0.86 +0.5 897,121 + OKGIIK_04090 0.86 +0.3 897,121 + OKGIIK_04090 0.86 -0.7 897,121 + OKGIIK_04090 0.86 +0.8 897,121 + OKGIIK_04090 0.86 -2.2 897,122 - OKGIIK_04090 0.86 +0.4 897,122 - OKGIIK_04090 0.86 -1.9 897,122 - OKGIIK_04090 0.86 -1.9 897,122 - OKGIIK_04090 0.86 +1.2 897,122 - OKGIIK_04090 0.86 -1.7 897,122 - OKGIIK_04090 0.86 -1.7 897,122 - OKGIIK_04090 0.86 -0.9 897,122 - OKGIIK_04090 0.86 +0.9 897,122 - OKGIIK_04090 0.86 -1.1 897,122 - OKGIIK_04090 0.86 -0.9 897,206 - -0.5 897,206 - +0.3 897,223 + -1.2 897,223 + +0.1 897,224 - +0.8 897,224 - -0.1 897,224 - +0.3 897,224 - +2.3 897,224 - -1.2 897,230 + -0.0 897,231 - +0.9 897,241 - -0.9
Or see this region's nucleotide sequence