Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phoR and phoB are separated by 40 nucleotides phoB and OKGIIK_03795 are separated by 90 nucleotides
OKGIIK_03785: phoR - phosphate regulon sensor histidine kinase PhoR, at 835,701 to 837,008
phoR
OKGIIK_03790: phoB - phosphate regulon transcriptional regulator PhoB, at 837,049 to 837,738
phoB
OKGIIK_03795: OKGIIK_03795 - Putative beta-barrel assembly-enhancing protease, at 837,829 to 839,532
_03795
Position (kb) 837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 836.326 kb on + strand, within phoR at 837.173 kb on + strand, within phoB at 837.173 kb on + strand, within phoB at 837.173 kb on + strand, within phoB at 837.173 kb on + strand, within phoB at 837.173 kb on + strand, within phoB at 837.173 kb on + strand, within phoB at 837.173 kb on + strand, within phoB at 837.173 kb on + strand, within phoB at 837.174 kb on - strand, within phoB at 837.174 kb on - strand, within phoB at 837.174 kb on - strand, within phoB at 837.174 kb on - strand, within phoB at 837.174 kb on - strand, within phoB at 837.174 kb on - strand, within phoB at 837.218 kb on + strand, within phoB at 837.219 kb on - strand, within phoB at 837.219 kb on - strand, within phoB at 837.248 kb on + strand, within phoB at 837.248 kb on + strand, within phoB at 837.248 kb on + strand, within phoB at 837.248 kb on + strand, within phoB at 837.248 kb on + strand, within phoB at 837.249 kb on - strand, within phoB at 837.249 kb on - strand, within phoB at 837.249 kb on - strand, within phoB at 837.249 kb on - strand, within phoB at 837.249 kb on - strand, within phoB at 837.249 kb on - strand, within phoB at 837.434 kb on + strand, within phoB at 837.434 kb on + strand, within phoB at 837.434 kb on + strand, within phoB at 837.434 kb on + strand, within phoB at 837.434 kb on + strand, within phoB at 837.434 kb on + strand, within phoB at 837.435 kb on - strand, within phoB at 837.435 kb on - strand, within phoB at 837.435 kb on - strand, within phoB at 837.435 kb on - strand, within phoB at 837.752 kb on + strand at 837.752 kb on + strand at 837.752 kb on + strand at 837.752 kb on + strand at 837.752 kb on + strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.753 kb on - strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.770 kb on + strand at 837.771 kb on - strand at 837.771 kb on - strand at 837.771 kb on - strand at 837.771 kb on - strand at 837.771 kb on - strand at 837.789 kb on + strand at 837.789 kb on + strand at 837.789 kb on + strand at 837.789 kb on + strand at 837.789 kb on + strand at 837.789 kb on + strand at 838.022 kb on + strand, within OKGIIK_03795 at 838.022 kb on + strand, within OKGIIK_03795 at 838.023 kb on - strand, within OKGIIK_03795 at 838.023 kb on - strand, within OKGIIK_03795 at 838.023 kb on - strand, within OKGIIK_03795 at 838.023 kb on - strand, within OKGIIK_03795 at 838.023 kb on - strand, within OKGIIK_03795 at 838.023 kb on - strand, within OKGIIK_03795 at 838.026 kb on - strand, within OKGIIK_03795 at 838.026 kb on - strand, within OKGIIK_03795 at 838.091 kb on + strand, within OKGIIK_03795 at 838.091 kb on + strand, within OKGIIK_03795 at 838.091 kb on + strand, within OKGIIK_03795 at 838.092 kb on - strand, within OKGIIK_03795 at 838.092 kb on - strand, within OKGIIK_03795 at 838.092 kb on - strand, within OKGIIK_03795 at 838.094 kb on + strand, within OKGIIK_03795 at 838.094 kb on + strand, within OKGIIK_03795 at 838.094 kb on + strand, within OKGIIK_03795 at 838.094 kb on + strand, within OKGIIK_03795 at 838.094 kb on + strand, within OKGIIK_03795 at 838.095 kb on - strand, within OKGIIK_03795 at 838.095 kb on - strand, within OKGIIK_03795 at 838.095 kb on - strand, within OKGIIK_03795 at 838.095 kb on - strand, within OKGIIK_03795 at 838.095 kb on - strand, within OKGIIK_03795 at 838.095 kb on - strand, within OKGIIK_03795 at 838.095 kb on - strand, within OKGIIK_03795 at 838.160 kb on + strand, within OKGIIK_03795 at 838.160 kb on + strand, within OKGIIK_03795 at 838.160 kb on + strand, within OKGIIK_03795 at 838.161 kb on - strand, within OKGIIK_03795 at 838.161 kb on - strand, within OKGIIK_03795 at 838.161 kb on - strand, within OKGIIK_03795 at 838.161 kb on - strand, within OKGIIK_03795 at 838.161 kb on - strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.169 kb on + strand, within OKGIIK_03795 at 838.170 kb on - strand, within OKGIIK_03795 at 838.170 kb on - strand, within OKGIIK_03795 at 838.170 kb on - strand, within OKGIIK_03795 at 838.170 kb on - strand, within OKGIIK_03795 at 838.170 kb on - strand, within OKGIIK_03795 at 838.170 kb on - strand, within OKGIIK_03795 at 838.269 kb on - strand, within OKGIIK_03795 at 838.305 kb on + strand, within OKGIIK_03795 at 838.317 kb on + strand, within OKGIIK_03795 at 838.318 kb on - strand, within OKGIIK_03795 at 838.318 kb on - strand, within OKGIIK_03795 at 838.318 kb on - strand, within OKGIIK_03795 at 838.318 kb on - strand, within OKGIIK_03795 at 838.318 kb on - strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.319 kb on + strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.320 kb on - strand, within OKGIIK_03795 at 838.479 kb on - strand, within OKGIIK_03795 at 838.529 kb on + strand, within OKGIIK_03795 at 838.529 kb on + strand, within OKGIIK_03795 at 838.529 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.532 kb on + strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.533 kb on - strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.592 kb on + strand, within OKGIIK_03795 at 838.593 kb on - strand, within OKGIIK_03795 at 838.593 kb on - strand, within OKGIIK_03795 at 838.593 kb on - strand, within OKGIIK_03795 at 838.593 kb on - strand, within OKGIIK_03795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 836,326 + phoR OKGIIK_03785 0.48 -0.3 837,173 + phoB OKGIIK_03790 0.18 -1.5 837,173 + phoB OKGIIK_03790 0.18 -2.2 837,173 + phoB OKGIIK_03790 0.18 +0.7 837,173 + phoB OKGIIK_03790 0.18 +0.3 837,173 + phoB OKGIIK_03790 0.18 -0.3 837,173 + phoB OKGIIK_03790 0.18 -1.8 837,173 + phoB OKGIIK_03790 0.18 -0.5 837,173 + phoB OKGIIK_03790 0.18 +0.3 837,174 - phoB OKGIIK_03790 0.18 -1.5 837,174 - phoB OKGIIK_03790 0.18 -1.6 837,174 - phoB OKGIIK_03790 0.18 +1.1 837,174 - phoB OKGIIK_03790 0.18 -1.8 837,174 - phoB OKGIIK_03790 0.18 +0.1 837,174 - phoB OKGIIK_03790 0.18 +0.4 837,218 + phoB OKGIIK_03790 0.24 +0.1 837,219 - phoB OKGIIK_03790 0.25 -1.1 837,219 - phoB OKGIIK_03790 0.25 -1.3 837,248 + phoB OKGIIK_03790 0.29 -0.9 837,248 + phoB OKGIIK_03790 0.29 -0.5 837,248 + phoB OKGIIK_03790 0.29 -0.4 837,248 + phoB OKGIIK_03790 0.29 +0.1 837,248 + phoB OKGIIK_03790 0.29 +0.1 837,249 - phoB OKGIIK_03790 0.29 +0.1 837,249 - phoB OKGIIK_03790 0.29 -0.1 837,249 - phoB OKGIIK_03790 0.29 -1.1 837,249 - phoB OKGIIK_03790 0.29 -0.4 837,249 - phoB OKGIIK_03790 0.29 +1.4 837,249 - phoB OKGIIK_03790 0.29 -1.6 837,434 + phoB OKGIIK_03790 0.56 +1.2 837,434 + phoB OKGIIK_03790 0.56 -0.3 837,434 + phoB OKGIIK_03790 0.56 +0.1 837,434 + phoB OKGIIK_03790 0.56 -0.1 837,434 + phoB OKGIIK_03790 0.56 +0.1 837,434 + phoB OKGIIK_03790 0.56 -1.4 837,435 - phoB OKGIIK_03790 0.56 -0.8 837,435 - phoB OKGIIK_03790 0.56 -0.9 837,435 - phoB OKGIIK_03790 0.56 +1.5 837,435 - phoB OKGIIK_03790 0.56 -0.7 837,752 + -0.5 837,752 + +1.0 837,752 + -2.1 837,752 + -0.3 837,752 + +1.7 837,753 - -0.5 837,753 - -0.5 837,753 - -0.3 837,753 - -0.4 837,753 - +0.1 837,753 - +0.1 837,753 - +0.7 837,753 - +0.2 837,753 - -0.2 837,753 - -1.6 837,753 - +0.6 837,753 - +0.4 837,753 - -0.5 837,753 - -0.7 837,753 - -0.7 837,753 - -0.3 837,753 - -0.3 837,753 - +0.7 837,753 - -1.5 837,753 - +1.5 837,753 - -1.3 837,753 - -0.9 837,753 - -1.4 837,753 - -0.7 837,753 - -2.0 837,753 - -1.3 837,753 - -0.7 837,770 + -1.0 837,770 + -1.7 837,770 + +0.6 837,770 + +0.2 837,770 + -0.3 837,770 + +0.1 837,770 + +0.3 837,770 + -0.7 837,770 + -1.4 837,770 + +0.3 837,770 + -0.6 837,771 - -0.1 837,771 - +0.3 837,771 - +0.8 837,771 - -0.4 837,771 - -0.5 837,789 + +0.1 837,789 + +0.8 837,789 + +0.1 837,789 + -0.9 837,789 + -1.5 837,789 + -0.2 838,022 + OKGIIK_03795 0.11 +0.7 838,022 + OKGIIK_03795 0.11 -0.3 838,023 - OKGIIK_03795 0.11 -0.7 838,023 - OKGIIK_03795 0.11 +0.3 838,023 - OKGIIK_03795 0.11 -0.7 838,023 - OKGIIK_03795 0.11 -0.9 838,023 - OKGIIK_03795 0.11 -1.3 838,023 - OKGIIK_03795 0.11 -0.7 838,026 - OKGIIK_03795 0.12 -1.5 838,026 - OKGIIK_03795 0.12 -1.9 838,091 + OKGIIK_03795 0.15 +0.5 838,091 + OKGIIK_03795 0.15 -0.5 838,091 + OKGIIK_03795 0.15 -1.0 838,092 - OKGIIK_03795 0.15 -0.3 838,092 - OKGIIK_03795 0.15 -1.1 838,092 - OKGIIK_03795 0.15 +0.3 838,094 + OKGIIK_03795 0.16 -0.5 838,094 + OKGIIK_03795 0.16 -0.8 838,094 + OKGIIK_03795 0.16 -0.9 838,094 + OKGIIK_03795 0.16 +0.1 838,094 + OKGIIK_03795 0.16 -1.4 838,095 - OKGIIK_03795 0.16 -1.2 838,095 - OKGIIK_03795 0.16 -0.4 838,095 - OKGIIK_03795 0.16 -1.0 838,095 - OKGIIK_03795 0.16 +0.5 838,095 - OKGIIK_03795 0.16 -1.7 838,095 - OKGIIK_03795 0.16 -0.6 838,095 - OKGIIK_03795 0.16 +0.1 838,160 + OKGIIK_03795 0.19 -1.5 838,160 + OKGIIK_03795 0.19 +1.7 838,160 + OKGIIK_03795 0.19 -0.5 838,161 - OKGIIK_03795 0.19 -0.5 838,161 - OKGIIK_03795 0.19 -0.3 838,161 - OKGIIK_03795 0.19 +0.3 838,161 - OKGIIK_03795 0.19 +0.1 838,161 - OKGIIK_03795 0.19 +0.1 838,169 + OKGIIK_03795 0.20 -0.1 838,169 + OKGIIK_03795 0.20 -0.5 838,169 + OKGIIK_03795 0.20 -2.8 838,169 + OKGIIK_03795 0.20 -0.9 838,169 + OKGIIK_03795 0.20 -0.5 838,169 + OKGIIK_03795 0.20 -0.3 838,169 + OKGIIK_03795 0.20 -0.8 838,169 + OKGIIK_03795 0.20 -1.7 838,169 + OKGIIK_03795 0.20 -1.4 838,170 - OKGIIK_03795 0.20 +0.1 838,170 - OKGIIK_03795 0.20 -1.3 838,170 - OKGIIK_03795 0.20 -1.7 838,170 - OKGIIK_03795 0.20 -1.7 838,170 - OKGIIK_03795 0.20 +0.1 838,170 - OKGIIK_03795 0.20 -1.9 838,269 - OKGIIK_03795 0.26 -0.7 838,305 + OKGIIK_03795 0.28 -1.1 838,317 + OKGIIK_03795 0.29 -0.5 838,318 - OKGIIK_03795 0.29 +0.5 838,318 - OKGIIK_03795 0.29 -1.3 838,318 - OKGIIK_03795 0.29 -1.4 838,318 - OKGIIK_03795 0.29 -0.7 838,318 - OKGIIK_03795 0.29 -1.2 838,319 + OKGIIK_03795 0.29 +0.8 838,319 + OKGIIK_03795 0.29 -0.3 838,319 + OKGIIK_03795 0.29 -1.1 838,319 + OKGIIK_03795 0.29 +0.1 838,319 + OKGIIK_03795 0.29 +1.3 838,319 + OKGIIK_03795 0.29 -0.5 838,319 + OKGIIK_03795 0.29 -0.3 838,319 + OKGIIK_03795 0.29 +1.1 838,319 + OKGIIK_03795 0.29 +1.3 838,319 + OKGIIK_03795 0.29 +1.7 838,319 + OKGIIK_03795 0.29 -0.7 838,319 + OKGIIK_03795 0.29 -0.6 838,319 + OKGIIK_03795 0.29 +0.1 838,320 - OKGIIK_03795 0.29 -0.9 838,320 - OKGIIK_03795 0.29 +0.2 838,320 - OKGIIK_03795 0.29 +0.1 838,320 - OKGIIK_03795 0.29 -0.8 838,320 - OKGIIK_03795 0.29 -0.5 838,320 - OKGIIK_03795 0.29 +0.1 838,320 - OKGIIK_03795 0.29 -2.9 838,320 - OKGIIK_03795 0.29 +0.1 838,320 - OKGIIK_03795 0.29 -0.7 838,320 - OKGIIK_03795 0.29 -1.3 838,320 - OKGIIK_03795 0.29 +0.3 838,320 - OKGIIK_03795 0.29 +0.7 838,320 - OKGIIK_03795 0.29 -0.1 838,479 - OKGIIK_03795 0.38 -2.7 838,529 + OKGIIK_03795 0.41 -0.1 838,529 + OKGIIK_03795 0.41 +0.5 838,529 + OKGIIK_03795 0.41 +0.1 838,532 + OKGIIK_03795 0.41 -0.3 838,532 + OKGIIK_03795 0.41 -1.6 838,532 + OKGIIK_03795 0.41 -0.7 838,532 + OKGIIK_03795 0.41 +0.3 838,532 + OKGIIK_03795 0.41 -0.3 838,532 + OKGIIK_03795 0.41 -0.5 838,532 + OKGIIK_03795 0.41 -0.4 838,532 + OKGIIK_03795 0.41 -1.1 838,532 + OKGIIK_03795 0.41 -2.5 838,532 + OKGIIK_03795 0.41 -0.5 838,532 + OKGIIK_03795 0.41 +1.3 838,532 + OKGIIK_03795 0.41 -0.5 838,532 + OKGIIK_03795 0.41 -1.3 838,532 + OKGIIK_03795 0.41 +1.3 838,532 + OKGIIK_03795 0.41 -0.5 838,532 + OKGIIK_03795 0.41 +1.1 838,532 + OKGIIK_03795 0.41 +0.1 838,533 - OKGIIK_03795 0.41 -1.1 838,533 - OKGIIK_03795 0.41 -0.3 838,533 - OKGIIK_03795 0.41 -0.5 838,533 - OKGIIK_03795 0.41 -0.5 838,533 - OKGIIK_03795 0.41 -0.9 838,533 - OKGIIK_03795 0.41 +0.1 838,533 - OKGIIK_03795 0.41 +1.3 838,533 - OKGIIK_03795 0.41 +0.1 838,533 - OKGIIK_03795 0.41 -0.6 838,592 + OKGIIK_03795 0.45 -0.6 838,592 + OKGIIK_03795 0.45 -0.4 838,592 + OKGIIK_03795 0.45 -0.5 838,592 + OKGIIK_03795 0.45 -1.3 838,592 + OKGIIK_03795 0.45 -0.7 838,592 + OKGIIK_03795 0.45 +0.5 838,592 + OKGIIK_03795 0.45 -0.9 838,592 + OKGIIK_03795 0.45 +0.2 838,592 + OKGIIK_03795 0.45 -0.5 838,593 - OKGIIK_03795 0.45 +0.1 838,593 - OKGIIK_03795 0.45 -0.0 838,593 - OKGIIK_03795 0.45 +1.5 838,593 - OKGIIK_03795 0.45 -2.5
Or see this region's nucleotide sequence