Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt relA and OKGIIK_02175 are separated by 86 nucleotides OKGIIK_02175 and wcaG are separated by 7 nucleotides
OKGIIK_02170: relA - GTP diphosphokinase, at 508,374 to 510,515
relA
OKGIIK_02175: OKGIIK_02175 - hypothetical protein, at 510,602 to 512,281
_02175
OKGIIK_02180: wcaG - Nucleoside-diphosphate-sugar epimerase, at 512,289 to 513,128
wcaG
Position (kb) 510
511
512
513 Strain fitness (log2 ratio) -2
-1
0
1 at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.745 kb on + strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 509.746 kb on - strand, within relA at 510.273 kb on + strand, within relA at 510.274 kb on - strand, within relA at 510.274 kb on - strand, within relA at 510.301 kb on - strand at 510.301 kb on - strand at 510.301 kb on - strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.568 kb on + strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 510.569 kb on - strand at 511.210 kb on - strand, within OKGIIK_02175 at 511.210 kb on - strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.259 kb on + strand, within OKGIIK_02175 at 511.260 kb on - strand, within OKGIIK_02175 at 511.931 kb on + strand, within OKGIIK_02175 at 511.931 kb on + strand, within OKGIIK_02175 at 511.931 kb on + strand, within OKGIIK_02175 at 511.931 kb on + strand, within OKGIIK_02175 at 511.932 kb on - strand, within OKGIIK_02175 at 511.932 kb on - strand, within OKGIIK_02175 at 511.941 kb on - strand, within OKGIIK_02175 at 511.941 kb on - strand, within OKGIIK_02175 at 511.941 kb on - strand, within OKGIIK_02175 at 512.700 kb on + strand, within wcaG at 512.700 kb on + strand, within wcaG at 513.126 kb on + strand at 513.126 kb on + strand at 513.127 kb on - strand at 513.127 kb on - strand at 513.166 kb on + strand at 513.166 kb on + strand at 513.166 kb on + strand at 513.166 kb on + strand at 513.167 kb on - strand at 513.167 kb on - strand at 513.167 kb on - strand at 513.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 509,745 + relA OKGIIK_02170 0.64 +0.6 509,745 + relA OKGIIK_02170 0.64 -0.2 509,745 + relA OKGIIK_02170 0.64 -0.9 509,745 + relA OKGIIK_02170 0.64 -0.6 509,745 + relA OKGIIK_02170 0.64 -1.4 509,745 + relA OKGIIK_02170 0.64 -0.8 509,746 - relA OKGIIK_02170 0.64 -0.9 509,746 - relA OKGIIK_02170 0.64 -2.2 509,746 - relA OKGIIK_02170 0.64 +1.3 509,746 - relA OKGIIK_02170 0.64 -0.2 510,273 + relA OKGIIK_02170 0.89 -0.1 510,274 - relA OKGIIK_02170 0.89 +0.2 510,274 - relA OKGIIK_02170 0.89 +0.5 510,301 - -1.0 510,301 - -0.8 510,301 - -1.0 510,568 + -0.8 510,568 + -0.5 510,568 + +0.8 510,568 + -0.2 510,568 + -0.3 510,568 + -2.0 510,568 + +0.6 510,568 + -0.4 510,568 + +1.1 510,568 + -1.0 510,568 + -0.8 510,568 + +0.6 510,568 + -0.7 510,568 + +0.3 510,568 + -0.4 510,569 - -0.4 510,569 - +0.2 510,569 - -1.6 510,569 - -0.3 510,569 - +0.3 510,569 - -1.0 510,569 - -0.0 510,569 - -1.8 510,569 - +1.3 510,569 - -0.2 510,569 - -0.6 510,569 - -0.4 510,569 - -1.9 510,569 - -0.0 510,569 - -0.1 510,569 - -1.2 511,210 - OKGIIK_02175 0.36 -0.8 511,210 - OKGIIK_02175 0.36 -1.0 511,259 + OKGIIK_02175 0.39 +0.1 511,259 + OKGIIK_02175 0.39 -0.8 511,259 + OKGIIK_02175 0.39 -2.3 511,259 + OKGIIK_02175 0.39 -1.7 511,259 + OKGIIK_02175 0.39 -2.3 511,259 + OKGIIK_02175 0.39 -0.4 511,259 + OKGIIK_02175 0.39 -0.4 511,259 + OKGIIK_02175 0.39 -0.4 511,260 - OKGIIK_02175 0.39 -1.0 511,931 + OKGIIK_02175 0.79 -1.0 511,931 + OKGIIK_02175 0.79 -0.2 511,931 + OKGIIK_02175 0.79 +0.8 511,931 + OKGIIK_02175 0.79 -1.4 511,932 - OKGIIK_02175 0.79 -1.0 511,932 - OKGIIK_02175 0.79 +0.6 511,941 - OKGIIK_02175 0.80 -0.8 511,941 - OKGIIK_02175 0.80 -1.0 511,941 - OKGIIK_02175 0.80 -0.5 512,700 + wcaG OKGIIK_02180 0.49 -0.8 512,700 + wcaG OKGIIK_02180 0.49 -2.6 513,126 + -0.6 513,126 + +1.7 513,127 - -0.8 513,127 - -0.4 513,166 + -0.4 513,166 + +0.6 513,166 + -0.4 513,166 + -0.4 513,167 - -0.6 513,167 - -1.8 513,167 - -2.1 513,167 - -0.4
Or see this region's nucleotide sequence