Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01815

Experiment: R2A_PIPES pH 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKGIIK_01805 and OKGIIK_01810 are separated by 294 nucleotidesOKGIIK_01810 and OKGIIK_01815 are separated by 104 nucleotidesOKGIIK_01815 and aspS are separated by 118 nucleotides OKGIIK_01805: OKGIIK_01805 - TonB dependent receptor, at 419,166 to 421,643 _01805 OKGIIK_01810: OKGIIK_01810 - Transcriptional regulator, at 421,938 to 422,243 _01810 OKGIIK_01815: OKGIIK_01815 - DUF3011 domain-containing protein, at 422,348 to 422,974 _01815 OKGIIK_01820: aspS - aspartate--tRNA ligase, at 423,093 to 424,865 aspS Position (kb) 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 421.691 kb on + strandat 421.691 kb on + strandat 421.691 kb on + strandat 421.692 kb on - strandat 421.692 kb on - strandat 421.692 kb on - strandat 421.692 kb on - strandat 421.717 kb on - strandat 421.722 kb on + strandat 421.722 kb on + strandat 421.722 kb on + strandat 421.722 kb on + strandat 421.723 kb on - strandat 421.723 kb on - strandat 421.723 kb on - strandat 421.723 kb on - strandat 421.724 kb on + strandat 421.724 kb on + strandat 421.724 kb on + strandat 421.724 kb on + strandat 421.724 kb on + strandat 421.724 kb on + strandat 421.725 kb on - strandat 421.725 kb on - strandat 421.732 kb on + strandat 421.733 kb on - strandat 421.733 kb on - strandat 421.826 kb on + strandat 421.826 kb on + strandat 421.826 kb on + strandat 421.827 kb on - strandat 421.829 kb on + strandat 421.829 kb on + strandat 421.829 kb on + strandat 421.829 kb on + strandat 421.829 kb on + strandat 421.830 kb on - strandat 421.830 kb on - strandat 421.830 kb on - strandat 421.830 kb on - strandat 421.830 kb on - strandat 421.891 kb on + strandat 421.947 kb on + strandat 421.947 kb on + strandat 421.947 kb on + strandat 421.947 kb on + strandat 421.947 kb on + strandat 421.947 kb on + strandat 421.947 kb on + strandat 421.947 kb on + strandat 421.948 kb on - strandat 422.286 kb on + strandat 422.286 kb on + strandat 422.286 kb on + strandat 422.287 kb on - strandat 422.477 kb on + strand, within OKGIIK_01815at 422.478 kb on - strand, within OKGIIK_01815at 422.478 kb on - strand, within OKGIIK_01815at 422.478 kb on - strand, within OKGIIK_01815at 422.478 kb on - strand, within OKGIIK_01815at 422.478 kb on - strand, within OKGIIK_01815at 422.504 kb on + strand, within OKGIIK_01815at 422.504 kb on + strand, within OKGIIK_01815at 422.504 kb on + strand, within OKGIIK_01815at 422.504 kb on + strand, within OKGIIK_01815at 422.504 kb on + strand, within OKGIIK_01815at 422.504 kb on + strand, within OKGIIK_01815at 422.505 kb on - strand, within OKGIIK_01815at 422.505 kb on - strand, within OKGIIK_01815at 422.516 kb on + strand, within OKGIIK_01815at 422.516 kb on + strand, within OKGIIK_01815at 422.516 kb on + strand, within OKGIIK_01815at 422.517 kb on - strand, within OKGIIK_01815at 422.517 kb on - strand, within OKGIIK_01815at 422.517 kb on - strand, within OKGIIK_01815at 422.517 kb on - strand, within OKGIIK_01815at 422.517 kb on - strand, within OKGIIK_01815at 422.517 kb on - strand, within OKGIIK_01815at 422.517 kb on - strand, within OKGIIK_01815at 422.517 kb on - strand, within OKGIIK_01815at 422.645 kb on + strand, within OKGIIK_01815at 422.645 kb on + strand, within OKGIIK_01815at 422.646 kb on - strand, within OKGIIK_01815at 422.646 kb on - strand, within OKGIIK_01815at 422.646 kb on - strand, within OKGIIK_01815at 422.646 kb on - strand, within OKGIIK_01815at 422.646 kb on - strand, within OKGIIK_01815at 422.646 kb on - strand, within OKGIIK_01815at 422.646 kb on - strand, within OKGIIK_01815at 422.696 kb on + strand, within OKGIIK_01815at 422.708 kb on + strand, within OKGIIK_01815at 422.729 kb on + strand, within OKGIIK_01815at 422.730 kb on - strand, within OKGIIK_01815at 422.810 kb on + strand, within OKGIIK_01815at 422.810 kb on + strand, within OKGIIK_01815at 422.810 kb on + strand, within OKGIIK_01815at 422.810 kb on + strand, within OKGIIK_01815at 422.810 kb on + strand, within OKGIIK_01815at 422.810 kb on + strand, within OKGIIK_01815at 422.811 kb on - strand, within OKGIIK_01815at 422.811 kb on - strand, within OKGIIK_01815at 422.811 kb on - strand, within OKGIIK_01815at 422.894 kb on + strand, within OKGIIK_01815at 422.894 kb on + strand, within OKGIIK_01815at 422.895 kb on - strand, within OKGIIK_01815at 422.895 kb on - strand, within OKGIIK_01815at 422.895 kb on - strand, within OKGIIK_01815at 422.972 kb on + strandat 422.972 kb on + strandat 422.972 kb on + strandat 422.972 kb on + strandat 422.972 kb on + strandat 422.972 kb on + strandat 422.972 kb on + strandat 422.972 kb on + strandat 422.972 kb on + strandat 422.973 kb on - strandat 422.973 kb on - strandat 422.973 kb on - strandat 422.973 kb on - strandat 422.973 kb on - strandat 422.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES pH 4
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421,691 + -0.1
421,691 + -0.3
421,691 + -0.0
421,692 - -0.3
421,692 - +0.3
421,692 - -1.8
421,692 - -0.8
421,717 - +1.0
421,722 + -1.2
421,722 + -0.2
421,722 + +0.1
421,722 + -0.0
421,723 - +2.6
421,723 - +0.1
421,723 - +1.0
421,723 - -1.6
421,724 + -0.0
421,724 + +0.5
421,724 + +1.4
421,724 + +1.0
421,724 + +1.0
421,724 + -0.8
421,725 - +1.1
421,725 - -0.7
421,732 + -0.0
421,733 - +0.2
421,733 - -0.6
421,826 + -0.0
421,826 + -1.3
421,826 + +0.8
421,827 - -1.0
421,829 + +1.4
421,829 + -1.7
421,829 + -0.0
421,829 + +0.3
421,829 + -0.6
421,830 - +0.9
421,830 - -0.8
421,830 - -0.3
421,830 - +1.1
421,830 - +0.1
421,891 + +0.2
421,947 + -0.6
421,947 + -0.0
421,947 + +0.3
421,947 + -1.0
421,947 + -0.0
421,947 + +0.4
421,947 + -0.0
421,947 + -0.3
421,948 - -0.2
422,286 + -0.5
422,286 + +0.2
422,286 + +0.7
422,287 - -0.4
422,477 + OKGIIK_01815 0.21 -0.3
422,478 - OKGIIK_01815 0.21 -0.6
422,478 - OKGIIK_01815 0.21 -0.4
422,478 - OKGIIK_01815 0.21 -0.8
422,478 - OKGIIK_01815 0.21 -0.8
422,478 - OKGIIK_01815 0.21 -0.1
422,504 + OKGIIK_01815 0.25 +0.4
422,504 + OKGIIK_01815 0.25 +0.2
422,504 + OKGIIK_01815 0.25 -0.5
422,504 + OKGIIK_01815 0.25 -0.0
422,504 + OKGIIK_01815 0.25 +1.2
422,504 + OKGIIK_01815 0.25 +0.2
422,505 - OKGIIK_01815 0.25 +1.4
422,505 - OKGIIK_01815 0.25 -2.6
422,516 + OKGIIK_01815 0.27 -0.3
422,516 + OKGIIK_01815 0.27 +0.1
422,516 + OKGIIK_01815 0.27 +1.0
422,517 - OKGIIK_01815 0.27 -1.8
422,517 - OKGIIK_01815 0.27 -1.0
422,517 - OKGIIK_01815 0.27 +1.1
422,517 - OKGIIK_01815 0.27 -0.8
422,517 - OKGIIK_01815 0.27 -0.1
422,517 - OKGIIK_01815 0.27 -1.2
422,517 - OKGIIK_01815 0.27 -0.8
422,517 - OKGIIK_01815 0.27 -0.7
422,645 + OKGIIK_01815 0.47 +0.7
422,645 + OKGIIK_01815 0.47 +1.0
422,646 - OKGIIK_01815 0.48 -0.0
422,646 - OKGIIK_01815 0.48 +0.3
422,646 - OKGIIK_01815 0.48 -0.5
422,646 - OKGIIK_01815 0.48 -0.3
422,646 - OKGIIK_01815 0.48 -1.0
422,646 - OKGIIK_01815 0.48 -0.6
422,646 - OKGIIK_01815 0.48 -0.5
422,696 + OKGIIK_01815 0.56 -0.5
422,708 + OKGIIK_01815 0.57 -1.0
422,729 + OKGIIK_01815 0.61 -1.2
422,730 - OKGIIK_01815 0.61 -1.2
422,810 + OKGIIK_01815 0.74 -1.9
422,810 + OKGIIK_01815 0.74 -1.5
422,810 + OKGIIK_01815 0.74 -0.1
422,810 + OKGIIK_01815 0.74 +0.9
422,810 + OKGIIK_01815 0.74 -0.1
422,810 + OKGIIK_01815 0.74 +1.8
422,811 - OKGIIK_01815 0.74 -0.6
422,811 - OKGIIK_01815 0.74 +0.3
422,811 - OKGIIK_01815 0.74 -1.3
422,894 + OKGIIK_01815 0.87 -0.3
422,894 + OKGIIK_01815 0.87 +0.7
422,895 - OKGIIK_01815 0.87 +0.6
422,895 - OKGIIK_01815 0.87 +0.2
422,895 - OKGIIK_01815 0.87 +0.4
422,972 + -0.5
422,972 + -0.1
422,972 + -0.0
422,972 + +1.3
422,972 + -0.3
422,972 + -0.0
422,972 + -1.0
422,972 + -0.0
422,972 + +1.5
422,973 - -1.0
422,973 - -0.0
422,973 - -0.6
422,973 - +0.8
422,973 - +1.2
422,973 - -1.2

Or see this region's nucleotide sequence