Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purR and OKGIIK_01755 are separated by 7 nucleotides OKGIIK_01755 and sucC are separated by 310 nucleotides
OKGIIK_01750: purR - LacI family transcriptional regulator, at 404,733 to 405,737
purR
OKGIIK_01755: OKGIIK_01755 - Histidine kinase, at 405,745 to 407,394
_01755
OKGIIK_01760: sucC - ADP-forming succinate--CoA ligase subunit beta, at 407,705 to 408,865
sucC
Position (kb) 405
406
407
408 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 404.901 kb on + strand, within purR at 404.901 kb on + strand, within purR at 404.901 kb on + strand, within purR at 404.901 kb on + strand, within purR at 404.902 kb on - strand, within purR at 404.949 kb on - strand, within purR at 404.949 kb on - strand, within purR at 404.949 kb on - strand, within purR at 405.057 kb on + strand, within purR at 405.057 kb on + strand, within purR at 405.058 kb on - strand, within purR at 405.058 kb on - strand, within purR at 405.193 kb on + strand, within purR at 405.193 kb on + strand, within purR at 405.194 kb on - strand, within purR at 405.570 kb on + strand, within purR at 405.571 kb on - strand, within purR at 405.571 kb on - strand, within purR at 405.571 kb on - strand, within purR at 405.664 kb on + strand at 405.664 kb on + strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.665 kb on - strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.848 kb on + strand at 405.849 kb on - strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.893 kb on + strand at 405.894 kb on - strand at 405.914 kb on + strand, within OKGIIK_01755 at 405.915 kb on - strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.927 kb on + strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.928 kb on - strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.929 kb on + strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 405.930 kb on - strand, within OKGIIK_01755 at 406.199 kb on + strand, within OKGIIK_01755 at 406.199 kb on + strand, within OKGIIK_01755 at 406.199 kb on + strand, within OKGIIK_01755 at 406.199 kb on + strand, within OKGIIK_01755 at 406.200 kb on - strand, within OKGIIK_01755 at 406.200 kb on - strand, within OKGIIK_01755 at 406.200 kb on - strand, within OKGIIK_01755 at 406.389 kb on - strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.625 kb on + strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.626 kb on - strand, within OKGIIK_01755 at 406.889 kb on + strand, within OKGIIK_01755 at 406.889 kb on + strand, within OKGIIK_01755 at 406.889 kb on + strand, within OKGIIK_01755 at 406.890 kb on - strand, within OKGIIK_01755 at 406.890 kb on - strand, within OKGIIK_01755 at 406.890 kb on - strand, within OKGIIK_01755 at 406.890 kb on - strand, within OKGIIK_01755 at 406.890 kb on - strand, within OKGIIK_01755 at 406.890 kb on - strand, within OKGIIK_01755 at 406.890 kb on - strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.962 kb on + strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 406.963 kb on - strand, within OKGIIK_01755 at 407.156 kb on + strand, within OKGIIK_01755 at 407.157 kb on - strand, within OKGIIK_01755 at 407.157 kb on - strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.207 kb on + strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.208 kb on - strand, within OKGIIK_01755 at 407.291 kb on + strand at 407.292 kb on - strand at 407.292 kb on - strand at 407.292 kb on - strand at 407.450 kb on + strand at 407.450 kb on + strand at 407.450 kb on + strand at 407.451 kb on - strand at 407.451 kb on - strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.452 kb on + strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.453 kb on - strand at 407.559 kb on + strand at 407.559 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.576 kb on + strand at 407.577 kb on - strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.592 kb on + strand at 407.699 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 404,901 + purR OKGIIK_01750 0.17 +2.0 404,901 + purR OKGIIK_01750 0.17 -0.5 404,901 + purR OKGIIK_01750 0.17 -0.1 404,901 + purR OKGIIK_01750 0.17 -0.6 404,902 - purR OKGIIK_01750 0.17 -0.1 404,949 - purR OKGIIK_01750 0.21 +1.4 404,949 - purR OKGIIK_01750 0.21 +0.0 404,949 - purR OKGIIK_01750 0.21 -1.7 405,057 + purR OKGIIK_01750 0.32 +1.4 405,057 + purR OKGIIK_01750 0.32 -0.9 405,058 - purR OKGIIK_01750 0.32 +0.0 405,058 - purR OKGIIK_01750 0.32 -0.9 405,193 + purR OKGIIK_01750 0.46 +0.5 405,193 + purR OKGIIK_01750 0.46 +1.1 405,194 - purR OKGIIK_01750 0.46 -0.0 405,570 + purR OKGIIK_01750 0.83 -0.3 405,571 - purR OKGIIK_01750 0.83 +0.3 405,571 - purR OKGIIK_01750 0.83 +1.6 405,571 - purR OKGIIK_01750 0.83 +1.0 405,664 + -0.3 405,664 + -1.4 405,665 - +0.4 405,665 - +2.3 405,665 - -0.3 405,665 - +2.0 405,665 - -2.2 405,665 - +0.3 405,665 - +1.3 405,848 + -0.8 405,848 + -1.3 405,848 + +0.1 405,848 + -1.0 405,848 + +1.0 405,848 + +1.0 405,848 + -1.2 405,848 + -0.9 405,848 + +0.4 405,849 - +0.0 405,893 + -0.2 405,893 + -0.3 405,893 + +0.7 405,893 + +1.6 405,893 + +0.8 405,893 + +0.0 405,893 + -0.2 405,894 - -0.9 405,914 + OKGIIK_01755 0.10 -1.3 405,915 - OKGIIK_01755 0.10 -1.0 405,927 + OKGIIK_01755 0.11 -0.1 405,927 + OKGIIK_01755 0.11 -2.4 405,927 + OKGIIK_01755 0.11 -1.7 405,927 + OKGIIK_01755 0.11 +1.0 405,927 + OKGIIK_01755 0.11 +0.4 405,927 + OKGIIK_01755 0.11 -0.3 405,927 + OKGIIK_01755 0.11 +0.1 405,927 + OKGIIK_01755 0.11 -0.8 405,927 + OKGIIK_01755 0.11 +0.6 405,927 + OKGIIK_01755 0.11 +0.7 405,928 - OKGIIK_01755 0.11 -0.2 405,928 - OKGIIK_01755 0.11 -0.5 405,928 - OKGIIK_01755 0.11 -1.6 405,928 - OKGIIK_01755 0.11 +0.3 405,928 - OKGIIK_01755 0.11 +1.3 405,928 - OKGIIK_01755 0.11 -0.2 405,929 + OKGIIK_01755 0.11 -0.4 405,929 + OKGIIK_01755 0.11 +1.1 405,929 + OKGIIK_01755 0.11 +0.5 405,929 + OKGIIK_01755 0.11 +0.4 405,929 + OKGIIK_01755 0.11 +1.7 405,929 + OKGIIK_01755 0.11 -0.1 405,929 + OKGIIK_01755 0.11 +1.4 405,929 + OKGIIK_01755 0.11 -1.0 405,929 + OKGIIK_01755 0.11 +1.6 405,929 + OKGIIK_01755 0.11 -0.3 405,929 + OKGIIK_01755 0.11 +0.0 405,929 + OKGIIK_01755 0.11 +0.7 405,929 + OKGIIK_01755 0.11 -1.2 405,929 + OKGIIK_01755 0.11 -0.2 405,929 + OKGIIK_01755 0.11 -1.7 405,929 + OKGIIK_01755 0.11 -1.3 405,930 - OKGIIK_01755 0.11 -1.3 405,930 - OKGIIK_01755 0.11 -0.4 405,930 - OKGIIK_01755 0.11 +1.1 405,930 - OKGIIK_01755 0.11 -1.7 405,930 - OKGIIK_01755 0.11 -0.0 405,930 - OKGIIK_01755 0.11 -0.8 405,930 - OKGIIK_01755 0.11 -0.3 405,930 - OKGIIK_01755 0.11 +0.6 406,199 + OKGIIK_01755 0.28 +1.0 406,199 + OKGIIK_01755 0.28 -0.6 406,199 + OKGIIK_01755 0.28 +1.0 406,199 + OKGIIK_01755 0.28 +0.7 406,200 - OKGIIK_01755 0.28 +0.8 406,200 - OKGIIK_01755 0.28 +0.2 406,200 - OKGIIK_01755 0.28 -0.8 406,389 - OKGIIK_01755 0.39 -0.6 406,625 + OKGIIK_01755 0.53 +0.7 406,625 + OKGIIK_01755 0.53 -0.4 406,625 + OKGIIK_01755 0.53 +0.0 406,625 + OKGIIK_01755 0.53 -0.8 406,625 + OKGIIK_01755 0.53 +1.3 406,626 - OKGIIK_01755 0.53 -0.8 406,626 - OKGIIK_01755 0.53 +0.8 406,626 - OKGIIK_01755 0.53 -0.7 406,626 - OKGIIK_01755 0.53 +0.8 406,626 - OKGIIK_01755 0.53 -0.3 406,626 - OKGIIK_01755 0.53 -1.4 406,626 - OKGIIK_01755 0.53 +0.1 406,626 - OKGIIK_01755 0.53 +0.2 406,626 - OKGIIK_01755 0.53 -2.8 406,889 + OKGIIK_01755 0.69 +0.2 406,889 + OKGIIK_01755 0.69 +0.2 406,889 + OKGIIK_01755 0.69 +2.8 406,890 - OKGIIK_01755 0.69 +0.4 406,890 - OKGIIK_01755 0.69 +1.0 406,890 - OKGIIK_01755 0.69 +0.0 406,890 - OKGIIK_01755 0.69 +0.0 406,890 - OKGIIK_01755 0.69 -0.8 406,890 - OKGIIK_01755 0.69 +0.0 406,890 - OKGIIK_01755 0.69 -1.8 406,962 + OKGIIK_01755 0.74 +0.8 406,962 + OKGIIK_01755 0.74 -0.0 406,962 + OKGIIK_01755 0.74 -0.9 406,962 + OKGIIK_01755 0.74 -2.1 406,962 + OKGIIK_01755 0.74 +1.2 406,962 + OKGIIK_01755 0.74 +0.5 406,962 + OKGIIK_01755 0.74 +0.1 406,962 + OKGIIK_01755 0.74 -1.0 406,962 + OKGIIK_01755 0.74 -1.7 406,962 + OKGIIK_01755 0.74 +1.4 406,962 + OKGIIK_01755 0.74 +0.1 406,962 + OKGIIK_01755 0.74 -0.2 406,962 + OKGIIK_01755 0.74 +1.4 406,962 + OKGIIK_01755 0.74 +0.0 406,962 + OKGIIK_01755 0.74 -1.0 406,962 + OKGIIK_01755 0.74 +2.3 406,963 - OKGIIK_01755 0.74 +0.0 406,963 - OKGIIK_01755 0.74 -1.2 406,963 - OKGIIK_01755 0.74 +0.8 406,963 - OKGIIK_01755 0.74 +0.4 406,963 - OKGIIK_01755 0.74 +1.6 406,963 - OKGIIK_01755 0.74 +0.9 406,963 - OKGIIK_01755 0.74 -0.4 406,963 - OKGIIK_01755 0.74 -1.6 406,963 - OKGIIK_01755 0.74 +0.6 406,963 - OKGIIK_01755 0.74 -1.3 406,963 - OKGIIK_01755 0.74 +1.6 406,963 - OKGIIK_01755 0.74 +0.5 406,963 - OKGIIK_01755 0.74 -0.8 407,156 + OKGIIK_01755 0.86 -1.8 407,157 - OKGIIK_01755 0.86 +0.0 407,157 - OKGIIK_01755 0.86 -1.0 407,207 + OKGIIK_01755 0.89 +0.4 407,207 + OKGIIK_01755 0.89 +0.3 407,207 + OKGIIK_01755 0.89 -3.8 407,207 + OKGIIK_01755 0.89 -0.4 407,207 + OKGIIK_01755 0.89 +0.2 407,207 + OKGIIK_01755 0.89 -1.4 407,207 + OKGIIK_01755 0.89 +0.4 407,207 + OKGIIK_01755 0.89 -0.3 407,207 + OKGIIK_01755 0.89 -1.1 407,207 + OKGIIK_01755 0.89 -0.5 407,207 + OKGIIK_01755 0.89 -1.0 407,208 - OKGIIK_01755 0.89 -1.8 407,208 - OKGIIK_01755 0.89 +2.0 407,208 - OKGIIK_01755 0.89 -0.3 407,208 - OKGIIK_01755 0.89 -2.5 407,208 - OKGIIK_01755 0.89 -0.8 407,208 - OKGIIK_01755 0.89 +0.1 407,208 - OKGIIK_01755 0.89 +1.2 407,208 - OKGIIK_01755 0.89 -0.7 407,208 - OKGIIK_01755 0.89 +1.6 407,208 - OKGIIK_01755 0.89 +0.3 407,208 - OKGIIK_01755 0.89 -0.8 407,208 - OKGIIK_01755 0.89 +2.0 407,291 + +1.1 407,292 - -1.7 407,292 - +0.7 407,292 - +0.8 407,450 + +2.0 407,450 + +0.2 407,450 + -1.3 407,451 - -0.6 407,451 - +0.4 407,452 + +0.7 407,452 + +2.0 407,452 + +0.0 407,452 + -1.6 407,452 + -1.3 407,452 + +1.1 407,452 + -0.6 407,452 + -0.8 407,452 + +1.6 407,452 + -0.3 407,452 + +0.4 407,453 - -0.8 407,453 - -0.1 407,453 - +1.4 407,453 - +0.2 407,453 - -1.0 407,453 - +0.0 407,453 - +0.8 407,453 - +0.5 407,453 - -0.3 407,453 - -1.0 407,559 + +0.4 407,559 + -0.2 407,576 + +1.0 407,576 + +1.5 407,576 + -0.3 407,576 + +0.0 407,576 + -0.2 407,576 + -0.9 407,576 + +1.7 407,576 + +0.2 407,576 + -1.3 407,576 + -1.0 407,576 + -1.0 407,576 + +1.0 407,576 + -1.0 407,576 + -0.8 407,576 + -0.2 407,576 + -1.2 407,576 + +1.7 407,576 + -0.3 407,576 + -0.5 407,576 + -1.9 407,576 + +1.0 407,576 + -0.1 407,576 + -1.6 407,576 + +0.4 407,576 + -1.4 407,577 - +1.8 407,592 + -0.4 407,592 + -0.6 407,592 + -0.4 407,592 + -0.6 407,592 + -0.1 407,592 + -0.3 407,592 + +0.3 407,592 + +0.1 407,592 + -0.3 407,592 + +0.1 407,592 + +0.0 407,592 + +0.0 407,699 + +0.9
Or see this region's nucleotide sequence