Experiment: R2A_PIPES pH 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcvT and gcvH are separated by 91 nucleotides gcvH and OKGIIK_01315 are separated by 897 nucleotides
OKGIIK_01305: gcvT - glycine cleavage system aminomethyltransferase GcvT, at 288,586 to 289,719
gcvT
OKGIIK_01310: gcvH - glycine cleavage system protein GcvH, at 289,811 to 290,206
gcvH
OKGIIK_01315: OKGIIK_01315 - Histone-like protein 2, at 291,104 to 291,394
_01315
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 288.872 kb on - strand, within gcvT at 288.922 kb on + strand, within gcvT at 288.923 kb on - strand, within gcvT at 288.923 kb on - strand, within gcvT at 289.198 kb on + strand, within gcvT at 289.199 kb on - strand, within gcvT at 289.679 kb on - strand at 289.681 kb on - strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.762 kb on + strand at 289.763 kb on - strand at 289.763 kb on - strand at 289.763 kb on - strand at 289.777 kb on + strand at 289.934 kb on + strand, within gcvH at 289.935 kb on - strand, within gcvH at 290.021 kb on + strand, within gcvH at 290.021 kb on + strand, within gcvH at 290.021 kb on + strand, within gcvH at 290.175 kb on - strand at 290.175 kb on - strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.385 kb on + strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.386 kb on - strand at 290.690 kb on + strand at 290.702 kb on + strand at 290.718 kb on + strand at 290.836 kb on - strand at 290.869 kb on + strand at 290.897 kb on + strand at 290.897 kb on + strand at 290.898 kb on - strand at 290.898 kb on - strand at 290.928 kb on + strand at 290.929 kb on - strand at 290.982 kb on + strand at 290.982 kb on + strand at 290.983 kb on - strand at 290.983 kb on - strand at 290.983 kb on - strand at 290.986 kb on + strand at 291.019 kb on + strand at 291.062 kb on - strand at 291.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES pH 4 remove 288,872 - gcvT OKGIIK_01305 0.25 -1.7 288,922 + gcvT OKGIIK_01305 0.30 -1.0 288,923 - gcvT OKGIIK_01305 0.30 -1.4 288,923 - gcvT OKGIIK_01305 0.30 -0.7 289,198 + gcvT OKGIIK_01305 0.54 -0.7 289,199 - gcvT OKGIIK_01305 0.54 +0.1 289,679 - -0.4 289,681 - -0.4 289,762 + -2.9 289,762 + -2.0 289,762 + +0.9 289,762 + -0.1 289,762 + -0.2 289,762 + -1.2 289,762 + -0.1 289,762 + -2.6 289,763 - -0.9 289,763 - -0.4 289,763 - +0.4 289,777 + +0.1 289,934 + gcvH OKGIIK_01310 0.31 +0.7 289,935 - gcvH OKGIIK_01310 0.31 -1.1 290,021 + gcvH OKGIIK_01310 0.53 -0.2 290,021 + gcvH OKGIIK_01310 0.53 -2.8 290,021 + gcvH OKGIIK_01310 0.53 -1.4 290,175 - -0.3 290,175 - +0.5 290,385 + -1.6 290,385 + -1.5 290,385 + +1.9 290,385 + -1.3 290,385 + -0.9 290,385 + -0.4 290,385 + -2.0 290,385 + +1.2 290,385 + -0.4 290,385 + +0.5 290,385 + -1.2 290,385 + -0.6 290,385 + -0.4 290,385 + -1.1 290,385 + -0.2 290,386 - -2.1 290,386 - -0.1 290,386 - -1.3 290,386 - -1.6 290,690 + -1.3 290,702 + +1.2 290,718 + -2.0 290,836 - +0.1 290,869 + -0.2 290,897 + -0.1 290,897 + -1.4 290,898 - -0.6 290,898 - -1.3 290,928 + +0.1 290,929 - -1.3 290,982 + -1.9 290,982 + +0.3 290,983 - +0.4 290,983 - +0.3 290,983 - -1.1 290,986 + +0.8 291,019 + +0.3 291,062 - -2.1 291,094 - -0.4
Or see this region's nucleotide sequence