Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06925 and MPMX19_06926 are separated by 180 nucleotides MPMX19_06926 and MPMX19_06927 are separated by 26 nucleotides MPMX19_06927 and MPMX19_06928 are separated by 42 nucleotides
MPMX19_06925: MPMX19_06925 - Putative HMP/thiamine import ATP-binding protein YkoD, at 200,190 to 201,533
_06925
MPMX19_06926: MPMX19_06926 - hypothetical protein, at 201,714 to 202,046
_06926
MPMX19_06927: MPMX19_06927 - FMN-dependent NADH-azoreductase 1, at 202,073 to 202,705
_06927
MPMX19_06928: MPMX19_06928 - hypothetical protein, at 202,748 to 203,020
_06928
Position (kb) 201
202
203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 201.513 kb on + strand at 201.513 kb on + strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.514 kb on - strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.575 kb on + strand at 201.577 kb on + strand at 201.578 kb on - strand at 201.578 kb on - strand at 201.585 kb on - strand at 201.589 kb on + strand at 201.589 kb on + strand at 201.592 kb on - strand at 201.592 kb on - strand at 201.899 kb on + strand, within MPMX19_06926 at 201.899 kb on + strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 202.021 kb on + strand at 202.021 kb on + strand at 202.021 kb on + strand at 202.022 kb on - strand at 202.022 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.218 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.404 kb on - strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.855 kb on + strand, within MPMX19_06928 at 202.856 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 201,513 + +0.5 201,513 + +0.4 201,514 - -1.0 201,514 - -0.2 201,514 - +1.5 201,514 - -0.2 201,575 + -0.6 201,575 + -0.2 201,575 + -0.6 201,575 + -0.1 201,577 + -1.8 201,578 - -0.7 201,578 - -1.4 201,585 - -1.3 201,589 + -0.6 201,589 + -2.0 201,592 - -0.9 201,592 - -0.9 201,899 + MPMX19_06926 0.56 -0.3 201,899 + MPMX19_06926 0.56 -1.5 201,900 - MPMX19_06926 0.56 -0.8 201,900 - MPMX19_06926 0.56 -1.8 201,958 + MPMX19_06926 0.73 +2.3 201,958 + MPMX19_06926 0.73 +0.1 201,958 + MPMX19_06926 0.73 -0.9 201,959 - MPMX19_06926 0.74 -1.6 201,959 - MPMX19_06926 0.74 +0.7 201,959 - MPMX19_06926 0.74 -0.8 201,959 - MPMX19_06926 0.74 -0.3 201,959 - MPMX19_06926 0.74 -2.5 202,021 + -0.9 202,021 + -1.0 202,021 + -0.9 202,022 - -0.8 202,022 - -1.9 202,075 - +0.7 202,075 - -0.8 202,075 - -1.9 202,218 + MPMX19_06927 0.23 -0.6 202,230 + MPMX19_06927 0.25 -0.0 202,230 + MPMX19_06927 0.25 +0.1 202,230 + MPMX19_06927 0.25 -0.3 202,231 - MPMX19_06927 0.25 -1.1 202,231 - MPMX19_06927 0.25 -1.5 202,231 - MPMX19_06927 0.25 -2.1 202,272 + MPMX19_06927 0.31 -0.7 202,272 + MPMX19_06927 0.31 -2.9 202,273 - MPMX19_06927 0.32 +0.4 202,273 - MPMX19_06927 0.32 -0.8 202,344 + MPMX19_06927 0.43 -0.1 202,344 + MPMX19_06927 0.43 -1.2 202,344 + MPMX19_06927 0.43 -0.4 202,344 + MPMX19_06927 0.43 -0.2 202,345 - MPMX19_06927 0.43 -1.2 202,345 - MPMX19_06927 0.43 -0.3 202,404 - MPMX19_06927 0.52 -1.3 202,416 + MPMX19_06927 0.54 -0.5 202,416 + MPMX19_06927 0.54 -0.6 202,416 + MPMX19_06927 0.54 -1.6 202,416 + MPMX19_06927 0.54 -0.3 202,416 + MPMX19_06927 0.54 +0.8 202,417 - MPMX19_06927 0.54 -1.2 202,417 - MPMX19_06927 0.54 +0.5 202,417 - MPMX19_06927 0.54 +0.1 202,855 + MPMX19_06928 0.39 -1.8 202,856 - MPMX19_06928 0.40 +0.1 202,918 - MPMX19_06928 0.62 -1.0 202,918 - MPMX19_06928 0.62 -1.3 202,918 - MPMX19_06928 0.62 +0.4
Or see this region's nucleotide sequence