Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06752

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06750 and MPMX19_06751 are separated by 10 nucleotidesMPMX19_06751 and MPMX19_06752 are separated by 17 nucleotidesMPMX19_06752 and MPMX19_06753 are separated by 38 nucleotides MPMX19_06750: MPMX19_06750 - Aliphatic sulfonates import ATP-binding protein SsuB, at 16,227 to 17,006 _06750 MPMX19_06751: MPMX19_06751 - Putative aliphatic sulfonates transport permease protein SsuC, at 17,017 to 17,811 _06751 MPMX19_06752: MPMX19_06752 - hypothetical protein, at 17,829 to 18,836 _06752 MPMX19_06753: MPMX19_06753 - Guanidinopropionase, at 18,875 to 19,891 _06753 Position (kb) 17 18 19Strain fitness (log2 ratio) -2 -1 0 1 2at 17.018 kb on + strandat 17.018 kb on + strandat 17.159 kb on + strand, within MPMX19_06751at 17.159 kb on + strand, within MPMX19_06751at 17.160 kb on - strand, within MPMX19_06751at 17.160 kb on - strand, within MPMX19_06751at 17.204 kb on + strand, within MPMX19_06751at 17.204 kb on + strand, within MPMX19_06751at 17.204 kb on + strand, within MPMX19_06751at 17.204 kb on + strand, within MPMX19_06751at 17.204 kb on + strand, within MPMX19_06751at 17.205 kb on - strand, within MPMX19_06751at 17.205 kb on - strand, within MPMX19_06751at 17.205 kb on - strand, within MPMX19_06751at 17.205 kb on - strand, within MPMX19_06751at 17.205 kb on - strand, within MPMX19_06751at 17.238 kb on + strand, within MPMX19_06751at 17.312 kb on + strand, within MPMX19_06751at 17.313 kb on - strand, within MPMX19_06751at 17.313 kb on - strand, within MPMX19_06751at 17.471 kb on + strand, within MPMX19_06751at 17.471 kb on + strand, within MPMX19_06751at 17.471 kb on + strand, within MPMX19_06751at 17.471 kb on + strand, within MPMX19_06751at 17.471 kb on + strand, within MPMX19_06751at 17.471 kb on + strand, within MPMX19_06751at 17.472 kb on - strand, within MPMX19_06751at 17.472 kb on - strand, within MPMX19_06751at 17.472 kb on - strand, within MPMX19_06751at 17.472 kb on - strand, within MPMX19_06751at 17.472 kb on - strand, within MPMX19_06751at 17.472 kb on - strand, within MPMX19_06751at 17.472 kb on - strand, within MPMX19_06751at 17.699 kb on + strand, within MPMX19_06751at 17.699 kb on + strand, within MPMX19_06751at 17.700 kb on - strand, within MPMX19_06751at 17.983 kb on + strand, within MPMX19_06752at 18.119 kb on - strand, within MPMX19_06752at 18.505 kb on + strand, within MPMX19_06752at 18.505 kb on + strand, within MPMX19_06752at 18.505 kb on + strand, within MPMX19_06752at 18.505 kb on + strand, within MPMX19_06752at 18.506 kb on - strand, within MPMX19_06752at 18.506 kb on - strand, within MPMX19_06752at 18.506 kb on - strand, within MPMX19_06752at 18.506 kb on - strand, within MPMX19_06752at 18.676 kb on + strand, within MPMX19_06752at 18.676 kb on + strand, within MPMX19_06752at 18.676 kb on + strand, within MPMX19_06752at 18.676 kb on + strand, within MPMX19_06752at 18.676 kb on + strand, within MPMX19_06752at 18.677 kb on - strand, within MPMX19_06752at 18.850 kb on + strandat 18.851 kb on - strandat 18.851 kb on - strandat 19.134 kb on + strand, within MPMX19_06753at 19.134 kb on + strand, within MPMX19_06753at 19.134 kb on + strand, within MPMX19_06753at 19.135 kb on - strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.263 kb on + strand, within MPMX19_06753at 19.264 kb on - strand, within MPMX19_06753at 19.264 kb on - strand, within MPMX19_06753at 19.264 kb on - strand, within MPMX19_06753at 19.264 kb on - strand, within MPMX19_06753at 19.264 kb on - strand, within MPMX19_06753at 19.264 kb on - strand, within MPMX19_06753at 19.264 kb on - strand, within MPMX19_06753at 19.264 kb on - strand, within MPMX19_06753at 19.312 kb on - strand, within MPMX19_06753at 19.312 kb on - strand, within MPMX19_06753at 19.353 kb on + strand, within MPMX19_06753at 19.353 kb on + strand, within MPMX19_06753at 19.354 kb on - strand, within MPMX19_06753at 19.354 kb on - strand, within MPMX19_06753at 19.354 kb on - strand, within MPMX19_06753at 19.354 kb on - strand, within MPMX19_06753at 19.354 kb on - strand, within MPMX19_06753at 19.371 kb on + strand, within MPMX19_06753at 19.372 kb on - strand, within MPMX19_06753at 19.372 kb on - strand, within MPMX19_06753at 19.452 kb on + strand, within MPMX19_06753at 19.515 kb on + strand, within MPMX19_06753at 19.515 kb on + strand, within MPMX19_06753at 19.803 kb on + strandat 19.803 kb on + strandat 19.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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17,018 + -1.6
17,018 + +0.5
17,159 + MPMX19_06751 0.18 -1.8
17,159 + MPMX19_06751 0.18 -1.8
17,160 - MPMX19_06751 0.18 -0.9
17,160 - MPMX19_06751 0.18 -0.2
17,204 + MPMX19_06751 0.24 -2.4
17,204 + MPMX19_06751 0.24 +0.7
17,204 + MPMX19_06751 0.24 -0.7
17,204 + MPMX19_06751 0.24 +1.7
17,204 + MPMX19_06751 0.24 +0.8
17,205 - MPMX19_06751 0.24 +0.1
17,205 - MPMX19_06751 0.24 -0.5
17,205 - MPMX19_06751 0.24 -0.2
17,205 - MPMX19_06751 0.24 +0.8
17,205 - MPMX19_06751 0.24 -0.2
17,238 + MPMX19_06751 0.28 +1.1
17,312 + MPMX19_06751 0.37 -0.8
17,313 - MPMX19_06751 0.37 -0.2
17,313 - MPMX19_06751 0.37 +0.7
17,471 + MPMX19_06751 0.57 -0.5
17,471 + MPMX19_06751 0.57 -0.1
17,471 + MPMX19_06751 0.57 -0.6
17,471 + MPMX19_06751 0.57 -1.3
17,471 + MPMX19_06751 0.57 -0.9
17,471 + MPMX19_06751 0.57 -0.1
17,472 - MPMX19_06751 0.57 +0.4
17,472 - MPMX19_06751 0.57 +0.1
17,472 - MPMX19_06751 0.57 -1.2
17,472 - MPMX19_06751 0.57 +0.7
17,472 - MPMX19_06751 0.57 -0.4
17,472 - MPMX19_06751 0.57 +0.9
17,472 - MPMX19_06751 0.57 -0.1
17,699 + MPMX19_06751 0.86 -0.8
17,699 + MPMX19_06751 0.86 -0.8
17,700 - MPMX19_06751 0.86 -1.1
17,983 + MPMX19_06752 0.15 -0.2
18,119 - MPMX19_06752 0.29 -0.9
18,505 + MPMX19_06752 0.67 +0.4
18,505 + MPMX19_06752 0.67 +0.4
18,505 + MPMX19_06752 0.67 -0.8
18,505 + MPMX19_06752 0.67 -0.8
18,506 - MPMX19_06752 0.67 -1.6
18,506 - MPMX19_06752 0.67 +0.4
18,506 - MPMX19_06752 0.67 +0.8
18,506 - MPMX19_06752 0.67 +1.9
18,676 + MPMX19_06752 0.84 -0.2
18,676 + MPMX19_06752 0.84 +0.6
18,676 + MPMX19_06752 0.84 +2.1
18,676 + MPMX19_06752 0.84 -0.9
18,676 + MPMX19_06752 0.84 +0.5
18,677 - MPMX19_06752 0.84 -0.1
18,850 + -1.5
18,851 - -1.3
18,851 - +0.7
19,134 + MPMX19_06753 0.25 -0.4
19,134 + MPMX19_06753 0.25 -0.8
19,134 + MPMX19_06753 0.25 -0.2
19,135 - MPMX19_06753 0.26 +0.3
19,263 + MPMX19_06753 0.38 -0.1
19,263 + MPMX19_06753 0.38 -1.1
19,263 + MPMX19_06753 0.38 -1.0
19,263 + MPMX19_06753 0.38 -0.3
19,263 + MPMX19_06753 0.38 +0.4
19,263 + MPMX19_06753 0.38 -0.6
19,263 + MPMX19_06753 0.38 -2.1
19,263 + MPMX19_06753 0.38 -2.0
19,263 + MPMX19_06753 0.38 -0.2
19,263 + MPMX19_06753 0.38 -0.6
19,264 - MPMX19_06753 0.38 -1.0
19,264 - MPMX19_06753 0.38 +0.7
19,264 - MPMX19_06753 0.38 -1.4
19,264 - MPMX19_06753 0.38 -0.3
19,264 - MPMX19_06753 0.38 -2.0
19,264 - MPMX19_06753 0.38 -0.3
19,264 - MPMX19_06753 0.38 +0.1
19,264 - MPMX19_06753 0.38 -0.1
19,312 - MPMX19_06753 0.43 -0.2
19,312 - MPMX19_06753 0.43 -0.3
19,353 + MPMX19_06753 0.47 +0.1
19,353 + MPMX19_06753 0.47 +0.9
19,354 - MPMX19_06753 0.47 +0.2
19,354 - MPMX19_06753 0.47 +0.1
19,354 - MPMX19_06753 0.47 +0.7
19,354 - MPMX19_06753 0.47 +0.1
19,354 - MPMX19_06753 0.47 -0.9
19,371 + MPMX19_06753 0.49 -0.6
19,372 - MPMX19_06753 0.49 -0.1
19,372 - MPMX19_06753 0.49 -0.3
19,452 + MPMX19_06753 0.57 -1.5
19,515 + MPMX19_06753 0.63 -0.8
19,515 + MPMX19_06753 0.63 +0.5
19,803 + -0.6
19,803 + -0.5
19,803 + -0.3

Or see this region's nucleotide sequence