Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06745 and MPMX19_06746 are separated by 82 nucleotides MPMX19_06746 and MPMX19_06747 overlap by 4 nucleotides MPMX19_06747 and MPMX19_06748 are separated by 3 nucleotides
MPMX19_06745: MPMX19_06745 - hypothetical protein, at 9,382 to 11,610
_06745
MPMX19_06746: MPMX19_06746 - Chemotaxis protein CheW, at 11,693 to 12,223
_06746
MPMX19_06747: MPMX19_06747 - Chemotaxis protein methyltransferase, at 12,220 to 13,107
_06747
MPMX19_06748: MPMX19_06748 - Protein-glutamate methylesterase/protein-glutamine glutaminase of group 3 operon, at 13,111 to 14,235
_06748
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 11.368 kb on + strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.369 kb on - strand, within MPMX19_06745 at 11.597 kb on - strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.729 kb on + strand at 11.730 kb on - strand at 11.730 kb on - strand at 11.730 kb on - strand at 11.766 kb on + strand, within MPMX19_06746 at 11.766 kb on + strand, within MPMX19_06746 at 11.767 kb on - strand, within MPMX19_06746 at 12.421 kb on + strand, within MPMX19_06747 at 12.421 kb on + strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.422 kb on - strand, within MPMX19_06747 at 12.640 kb on + strand, within MPMX19_06747 at 12.640 kb on + strand, within MPMX19_06747 at 12.640 kb on + strand, within MPMX19_06747 at 12.640 kb on + strand, within MPMX19_06747 at 12.641 kb on - strand, within MPMX19_06747 at 12.641 kb on - strand, within MPMX19_06747 at 12.641 kb on - strand, within MPMX19_06747 at 12.641 kb on - strand, within MPMX19_06747 at 12.715 kb on - strand, within MPMX19_06747 at 12.715 kb on - strand, within MPMX19_06747 at 12.715 kb on - strand, within MPMX19_06747 at 12.802 kb on + strand, within MPMX19_06747 at 12.803 kb on - strand, within MPMX19_06747 at 12.803 kb on - strand, within MPMX19_06747 at 12.803 kb on - strand, within MPMX19_06747 at 12.904 kb on + strand, within MPMX19_06747 at 12.955 kb on + strand, within MPMX19_06747 at 12.956 kb on - strand, within MPMX19_06747 at 12.956 kb on - strand, within MPMX19_06747 at 13.228 kb on + strand, within MPMX19_06748 at 13.228 kb on + strand, within MPMX19_06748 at 13.228 kb on + strand, within MPMX19_06748 at 13.228 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.773 kb on + strand, within MPMX19_06748 at 13.774 kb on - strand, within MPMX19_06748 at 13.774 kb on - strand, within MPMX19_06748 at 13.774 kb on - strand, within MPMX19_06748 at 13.858 kb on - strand, within MPMX19_06748 at 13.902 kb on + strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.903 kb on - strand, within MPMX19_06748 at 13.930 kb on + strand, within MPMX19_06748
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 11,368 + MPMX19_06745 0.89 -1.3 11,369 - MPMX19_06745 0.89 -1.7 11,369 - MPMX19_06745 0.89 -1.0 11,369 - MPMX19_06745 0.89 -0.2 11,369 - MPMX19_06745 0.89 -1.9 11,597 - +0.5 11,729 + +0.8 11,729 + -0.3 11,729 + -2.5 11,729 + -0.7 11,729 + +0.0 11,730 - -0.7 11,730 - -0.9 11,730 - -1.2 11,766 + MPMX19_06746 0.14 +0.4 11,766 + MPMX19_06746 0.14 +0.7 11,767 - MPMX19_06746 0.14 -0.2 12,421 + MPMX19_06747 0.23 -1.2 12,421 + MPMX19_06747 0.23 -1.1 12,422 - MPMX19_06747 0.23 -0.6 12,422 - MPMX19_06747 0.23 -1.0 12,422 - MPMX19_06747 0.23 +3.0 12,422 - MPMX19_06747 0.23 -0.9 12,640 + MPMX19_06747 0.47 -0.3 12,640 + MPMX19_06747 0.47 -2.6 12,640 + MPMX19_06747 0.47 -0.2 12,640 + MPMX19_06747 0.47 -1.1 12,641 - MPMX19_06747 0.47 -2.2 12,641 - MPMX19_06747 0.47 -0.1 12,641 - MPMX19_06747 0.47 -0.5 12,641 - MPMX19_06747 0.47 -0.6 12,715 - MPMX19_06747 0.56 +1.5 12,715 - MPMX19_06747 0.56 -1.3 12,715 - MPMX19_06747 0.56 -1.3 12,802 + MPMX19_06747 0.66 +1.1 12,803 - MPMX19_06747 0.66 -0.3 12,803 - MPMX19_06747 0.66 -0.9 12,803 - MPMX19_06747 0.66 -0.7 12,904 + MPMX19_06747 0.77 -3.4 12,955 + MPMX19_06747 0.83 -0.8 12,956 - MPMX19_06747 0.83 -1.9 12,956 - MPMX19_06747 0.83 -0.9 13,228 + MPMX19_06748 0.10 -0.1 13,228 + MPMX19_06748 0.10 -1.7 13,228 + MPMX19_06748 0.10 +0.9 13,228 + MPMX19_06748 0.10 +0.0 13,773 + MPMX19_06748 0.59 -0.5 13,773 + MPMX19_06748 0.59 -0.1 13,773 + MPMX19_06748 0.59 +1.0 13,773 + MPMX19_06748 0.59 +0.7 13,773 + MPMX19_06748 0.59 -1.3 13,774 - MPMX19_06748 0.59 -0.0 13,774 - MPMX19_06748 0.59 +0.2 13,774 - MPMX19_06748 0.59 -2.6 13,858 - MPMX19_06748 0.66 -1.5 13,902 + MPMX19_06748 0.70 -1.1 13,903 - MPMX19_06748 0.70 -0.2 13,903 - MPMX19_06748 0.70 +0.2 13,903 - MPMX19_06748 0.70 -1.3 13,903 - MPMX19_06748 0.70 -0.6 13,903 - MPMX19_06748 0.70 +0.4 13,903 - MPMX19_06748 0.70 -1.6 13,903 - MPMX19_06748 0.70 +0.1 13,903 - MPMX19_06748 0.70 -1.3 13,903 - MPMX19_06748 0.70 -2.3 13,930 + MPMX19_06748 0.73 -1.6
Or see this region's nucleotide sequence