Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06738 and MPMX19_06739 are separated by 150 nucleotides MPMX19_06739 and MPMX19_06740 overlap by 4 nucleotides MPMX19_06740 and MPMX19_06741 are separated by 409 nucleotides
MPMX19_06738: MPMX19_06738 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 2,730 to 3,680
_06738
MPMX19_06739: MPMX19_06739 - hypothetical protein, at 3,831 to 5,192
_06739
MPMX19_06740: MPMX19_06740 - hypothetical protein, at 5,189 to 5,743
_06740
MPMX19_06741: MPMX19_06741 - hypothetical protein, at 6,153 to 6,431
_06741
Position (kb) 3
4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2.938 kb on + strand, within MPMX19_06738 at 2.938 kb on + strand, within MPMX19_06738 at 2.938 kb on + strand, within MPMX19_06738 at 2.938 kb on + strand, within MPMX19_06738 at 2.939 kb on - strand, within MPMX19_06738 at 2.939 kb on - strand, within MPMX19_06738 at 2.977 kb on + strand, within MPMX19_06738 at 2.978 kb on - strand, within MPMX19_06738 at 3.098 kb on - strand, within MPMX19_06738 at 3.098 kb on - strand, within MPMX19_06738 at 3.184 kb on + strand, within MPMX19_06738 at 3.184 kb on + strand, within MPMX19_06738 at 3.184 kb on + strand, within MPMX19_06738 at 3.184 kb on + strand, within MPMX19_06738 at 3.184 kb on + strand, within MPMX19_06738 at 3.185 kb on - strand, within MPMX19_06738 at 3.185 kb on - strand, within MPMX19_06738 at 3.185 kb on - strand, within MPMX19_06738 at 3.626 kb on - strand at 3.720 kb on - strand at 3.745 kb on + strand at 3.745 kb on + strand at 3.746 kb on - strand at 3.779 kb on - strand at 4.096 kb on + strand, within MPMX19_06739 at 4.096 kb on + strand, within MPMX19_06739 at 4.097 kb on - strand, within MPMX19_06739 at 4.097 kb on - strand, within MPMX19_06739 at 4.132 kb on + strand, within MPMX19_06739 at 4.270 kb on + strand, within MPMX19_06739 at 4.270 kb on + strand, within MPMX19_06739 at 4.270 kb on + strand, within MPMX19_06739 at 4.270 kb on + strand, within MPMX19_06739 at 4.271 kb on - strand, within MPMX19_06739 at 4.447 kb on + strand, within MPMX19_06739 at 4.448 kb on - strand, within MPMX19_06739 at 4.448 kb on - strand, within MPMX19_06739 at 4.912 kb on + strand, within MPMX19_06739 at 4.912 kb on + strand, within MPMX19_06739 at 4.912 kb on + strand, within MPMX19_06739 at 4.912 kb on + strand, within MPMX19_06739 at 4.912 kb on + strand, within MPMX19_06739 at 4.912 kb on + strand, within MPMX19_06739 at 4.912 kb on + strand, within MPMX19_06739 at 4.913 kb on - strand, within MPMX19_06739 at 4.913 kb on - strand, within MPMX19_06739 at 5.017 kb on + strand, within MPMX19_06739 at 5.017 kb on + strand, within MPMX19_06739 at 5.017 kb on + strand, within MPMX19_06739 at 5.018 kb on - strand, within MPMX19_06739 at 5.018 kb on - strand, within MPMX19_06739 at 5.047 kb on + strand, within MPMX19_06739 at 5.047 kb on + strand, within MPMX19_06739 at 5.047 kb on + strand, within MPMX19_06739 at 5.047 kb on + strand, within MPMX19_06739 at 5.047 kb on + strand, within MPMX19_06739 at 5.047 kb on + strand, within MPMX19_06739 at 5.048 kb on - strand, within MPMX19_06739 at 5.048 kb on - strand, within MPMX19_06739 at 5.048 kb on - strand, within MPMX19_06739 at 5.187 kb on - strand at 5.187 kb on - strand at 5.187 kb on - strand at 5.187 kb on - strand at 5.235 kb on + strand at 5.235 kb on + strand at 5.236 kb on - strand at 5.236 kb on - strand at 5.236 kb on - strand at 5.774 kb on + strand at 5.774 kb on + strand at 5.774 kb on + strand at 5.774 kb on + strand at 5.775 kb on - strand at 5.775 kb on - strand at 5.775 kb on - strand at 5.775 kb on - strand at 5.944 kb on + strand at 5.944 kb on + strand at 5.945 kb on - strand at 5.949 kb on + strand at 5.950 kb on - strand at 5.950 kb on - strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.956 kb on + strand at 5.957 kb on - strand at 5.957 kb on - strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.958 kb on + strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand at 5.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 2,938 + MPMX19_06738 0.22 -1.4 2,938 + MPMX19_06738 0.22 +0.8 2,938 + MPMX19_06738 0.22 +0.7 2,938 + MPMX19_06738 0.22 +0.1 2,939 - MPMX19_06738 0.22 +1.2 2,939 - MPMX19_06738 0.22 +0.1 2,977 + MPMX19_06738 0.26 -0.1 2,978 - MPMX19_06738 0.26 -0.5 3,098 - MPMX19_06738 0.39 -0.0 3,098 - MPMX19_06738 0.39 -0.3 3,184 + MPMX19_06738 0.48 -1.0 3,184 + MPMX19_06738 0.48 +0.3 3,184 + MPMX19_06738 0.48 -1.5 3,184 + MPMX19_06738 0.48 +0.4 3,184 + MPMX19_06738 0.48 -0.3 3,185 - MPMX19_06738 0.48 -1.3 3,185 - MPMX19_06738 0.48 -1.0 3,185 - MPMX19_06738 0.48 -0.4 3,626 - -1.5 3,720 - +0.3 3,745 + -1.9 3,745 + -0.1 3,746 - -0.2 3,779 - -1.0 4,096 + MPMX19_06739 0.19 -0.8 4,096 + MPMX19_06739 0.19 -0.6 4,097 - MPMX19_06739 0.20 -0.5 4,097 - MPMX19_06739 0.20 +0.1 4,132 + MPMX19_06739 0.22 -1.8 4,270 + MPMX19_06739 0.32 -0.9 4,270 + MPMX19_06739 0.32 -0.6 4,270 + MPMX19_06739 0.32 -0.2 4,270 + MPMX19_06739 0.32 +0.5 4,271 - MPMX19_06739 0.32 +0.4 4,447 + MPMX19_06739 0.45 -0.5 4,448 - MPMX19_06739 0.45 -2.3 4,448 - MPMX19_06739 0.45 -1.5 4,912 + MPMX19_06739 0.79 -0.5 4,912 + MPMX19_06739 0.79 +1.1 4,912 + MPMX19_06739 0.79 +0.7 4,912 + MPMX19_06739 0.79 +0.4 4,912 + MPMX19_06739 0.79 -1.7 4,912 + MPMX19_06739 0.79 -1.6 4,912 + MPMX19_06739 0.79 -0.5 4,913 - MPMX19_06739 0.79 -0.3 4,913 - MPMX19_06739 0.79 -1.3 5,017 + MPMX19_06739 0.87 -0.2 5,017 + MPMX19_06739 0.87 -0.9 5,017 + MPMX19_06739 0.87 -0.9 5,018 - MPMX19_06739 0.87 -0.1 5,018 - MPMX19_06739 0.87 -0.8 5,047 + MPMX19_06739 0.89 +0.1 5,047 + MPMX19_06739 0.89 -0.3 5,047 + MPMX19_06739 0.89 +0.3 5,047 + MPMX19_06739 0.89 +0.1 5,047 + MPMX19_06739 0.89 +0.7 5,047 + MPMX19_06739 0.89 -1.5 5,048 - MPMX19_06739 0.89 -0.6 5,048 - MPMX19_06739 0.89 +0.9 5,048 - MPMX19_06739 0.89 -0.4 5,187 - -0.4 5,187 - -0.1 5,187 - -0.1 5,187 - +0.1 5,235 + +0.2 5,235 + -0.8 5,236 - -0.7 5,236 - +2.3 5,236 - -2.1 5,774 + +1.7 5,774 + +2.1 5,774 + -0.9 5,774 + +0.2 5,775 - -1.3 5,775 - -0.5 5,775 - -0.4 5,775 - -0.5 5,944 + -0.3 5,944 + +0.0 5,945 - -0.2 5,949 + -0.1 5,950 - -1.2 5,950 - -0.1 5,956 + -0.2 5,956 + +0.7 5,956 + -1.0 5,956 + -0.3 5,956 + -0.7 5,956 + -0.6 5,956 + -0.4 5,956 + -0.7 5,957 - -0.3 5,957 - +0.4 5,958 + -0.7 5,958 + -1.0 5,958 + -0.9 5,958 + -0.5 5,958 + -1.6 5,958 + -0.9 5,958 + -1.6 5,958 + +0.9 5,958 + -0.4 5,958 + -1.3 5,958 + -0.4 5,958 + +1.7 5,958 + -1.5 5,958 + +0.9 5,958 + +0.9 5,958 + +0.2 5,958 + -0.7 5,958 + -0.3 5,958 + -2.2 5,959 - -0.9 5,959 - -0.8 5,959 - -0.9 5,959 - -2.0 5,959 - -0.5 5,959 - -1.9 5,959 - -0.6 5,959 - -0.3 5,959 - +0.4 5,959 - -0.2 5,959 - -2.9 5,959 - -0.1 5,959 - +0.4 5,959 - -1.3 5,959 - +0.4 5,959 - +0.1 5,959 - -1.5 5,959 - -0.4 5,959 - +0.7
Or see this region's nucleotide sequence