Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06722 and MPMX19_06723 are separated by 213 nucleotides MPMX19_06723 and MPMX19_06724 are separated by 3 nucleotides MPMX19_06724 and MPMX19_06725 are separated by 97 nucleotides
MPMX19_06722: MPMX19_06722 - Vitamin B12 import ATP-binding protein BtuD, at 295,819 to 297,252
_06722
MPMX19_06723: MPMX19_06723 - hypothetical protein, at 297,466 to 300,912
_06723
MPMX19_06724: MPMX19_06724 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 300,916 to 301,467
_06724
MPMX19_06725: MPMX19_06725 - dTDP-glucose 4,6-dehydratase 2, at 301,565 to 302,632
_06725
Position (kb) 297
298
299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 297.250 kb on + strand at 297.250 kb on + strand at 297.251 kb on - strand at 297.365 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.366 kb on + strand at 297.367 kb on - strand at 297.367 kb on - strand at 297.367 kb on - strand at 297.510 kb on + strand at 297.655 kb on + strand at 297.748 kb on + strand at 297.763 kb on + strand at 297.763 kb on + strand at 297.763 kb on + strand at 297.898 kb on + strand, within MPMX19_06723 at 297.898 kb on + strand, within MPMX19_06723 at 298.834 kb on + strand, within MPMX19_06723 at 298.834 kb on + strand, within MPMX19_06723 at 298.834 kb on + strand, within MPMX19_06723 at 299.032 kb on + strand, within MPMX19_06723 at 299.032 kb on + strand, within MPMX19_06723 at 299.032 kb on + strand, within MPMX19_06723 at 299.068 kb on + strand, within MPMX19_06723 at 299.068 kb on + strand, within MPMX19_06723 at 299.167 kb on + strand, within MPMX19_06723 at 299.167 kb on + strand, within MPMX19_06723 at 299.167 kb on + strand, within MPMX19_06723 at 299.260 kb on + strand, within MPMX19_06723 at 299.260 kb on + strand, within MPMX19_06723 at 299.278 kb on + strand, within MPMX19_06723 at 299.317 kb on + strand, within MPMX19_06723 at 299.536 kb on + strand, within MPMX19_06723 at 299.761 kb on + strand, within MPMX19_06723 at 299.830 kb on + strand, within MPMX19_06723 at 300.157 kb on + strand, within MPMX19_06723 at 300.202 kb on + strand, within MPMX19_06723 at 300.202 kb on + strand, within MPMX19_06723 at 300.220 kb on + strand, within MPMX19_06723 at 300.373 kb on + strand, within MPMX19_06723 at 300.667 kb on + strand at 300.667 kb on + strand at 300.787 kb on + strand at 300.787 kb on + strand at 300.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 297,250 + +0.0 297,250 + +0.1 297,251 - -1.5 297,365 + +0.2 297,366 + -1.5 297,366 + -0.0 297,366 + +0.5 297,366 + -1.0 297,366 + -0.4 297,366 + -0.9 297,366 + -0.8 297,366 + +0.8 297,366 + -1.5 297,366 + +0.9 297,366 + +0.3 297,366 + -2.6 297,366 + -1.5 297,366 + +0.9 297,366 + -2.6 297,366 + +0.9 297,366 + -0.5 297,366 + -0.3 297,366 + +0.6 297,366 + +0.4 297,366 + -0.3 297,366 + -0.7 297,366 + +1.1 297,366 + -0.9 297,366 + +1.1 297,366 + -1.9 297,366 + -1.0 297,366 + -0.5 297,366 + +0.5 297,366 + -0.2 297,366 + -1.7 297,366 + -0.3 297,366 + -0.7 297,366 + -1.3 297,366 + +0.1 297,366 + +0.7 297,366 + -0.6 297,366 + +0.3 297,366 + -0.7 297,366 + -0.1 297,366 + +0.5 297,366 + +0.0 297,366 + -0.6 297,366 + +0.2 297,366 + -1.4 297,366 + -0.4 297,366 + -0.7 297,366 + -0.7 297,366 + -0.8 297,366 + -3.0 297,366 + -0.6 297,366 + -0.1 297,366 + -1.3 297,366 + +0.4 297,366 + -0.5 297,366 + -0.8 297,366 + -0.0 297,366 + +0.2 297,366 + -1.0 297,367 - -1.1 297,367 - -1.7 297,367 - -1.3 297,510 + -1.5 297,655 + -1.8 297,748 + +0.1 297,763 + -1.5 297,763 + -1.0 297,763 + -0.5 297,898 + MPMX19_06723 0.13 -2.6 297,898 + MPMX19_06723 0.13 -0.1 298,834 + MPMX19_06723 0.40 +0.1 298,834 + MPMX19_06723 0.40 -0.5 298,834 + MPMX19_06723 0.40 -1.1 299,032 + MPMX19_06723 0.45 +0.7 299,032 + MPMX19_06723 0.45 +0.3 299,032 + MPMX19_06723 0.45 -0.1 299,068 + MPMX19_06723 0.46 -1.0 299,068 + MPMX19_06723 0.46 -0.7 299,167 + MPMX19_06723 0.49 -0.8 299,167 + MPMX19_06723 0.49 -0.6 299,167 + MPMX19_06723 0.49 -0.7 299,260 + MPMX19_06723 0.52 -0.7 299,260 + MPMX19_06723 0.52 -1.1 299,278 + MPMX19_06723 0.53 -0.7 299,317 + MPMX19_06723 0.54 +0.9 299,536 + MPMX19_06723 0.60 -0.3 299,761 + MPMX19_06723 0.67 -0.0 299,830 + MPMX19_06723 0.69 -0.5 300,157 + MPMX19_06723 0.78 -1.1 300,202 + MPMX19_06723 0.79 +0.1 300,202 + MPMX19_06723 0.79 +1.7 300,220 + MPMX19_06723 0.80 -0.3 300,373 + MPMX19_06723 0.84 -0.1 300,667 + -0.9 300,667 + +1.7 300,787 + -0.9 300,787 + +0.1 300,787 + -1.3
Or see this region's nucleotide sequence