Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06405 and MPMX19_06406 are separated by 148 nucleotides MPMX19_06406 and MPMX19_06407 overlap by 11 nucleotides
MPMX19_06405: MPMX19_06405 - hypothetical protein, at 171,051 to 171,518
_06405
MPMX19_06406: MPMX19_06406 - hypothetical protein, at 171,667 to 172,011
_06406
MPMX19_06407: MPMX19_06407 - Cation efflux system protein CusA, at 172,001 to 175,189
_06407
Position (kb) 171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 170.117 kb on + strand at 170.364 kb on + strand at 170.364 kb on + strand at 170.364 kb on + strand at 170.365 kb on - strand at 170.365 kb on - strand at 170.365 kb on - strand at 170.541 kb on + strand at 170.541 kb on + strand at 170.542 kb on - strand at 170.542 kb on - strand at 170.542 kb on - strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.544 kb on + strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.545 kb on - strand at 170.556 kb on + strand at 170.557 kb on - strand at 170.557 kb on - strand at 170.557 kb on - strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.705 kb on + strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.706 kb on - strand at 170.827 kb on + strand at 170.827 kb on + strand at 170.827 kb on + strand at 170.827 kb on + strand at 170.827 kb on + strand at 170.828 kb on - strand at 170.828 kb on - strand at 170.828 kb on - strand at 170.828 kb on - strand at 170.910 kb on + strand at 170.911 kb on - strand at 171.008 kb on + strand at 171.008 kb on + strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.009 kb on - strand at 171.052 kb on + strand at 171.052 kb on + strand at 171.052 kb on + strand at 171.053 kb on - strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.064 kb on + strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.065 kb on - strand at 171.103 kb on + strand, within MPMX19_06405 at 171.103 kb on + strand, within MPMX19_06405 at 171.104 kb on - strand, within MPMX19_06405 at 171.104 kb on - strand, within MPMX19_06405 at 171.189 kb on + strand, within MPMX19_06405 at 171.189 kb on + strand, within MPMX19_06405 at 171.190 kb on - strand, within MPMX19_06405 at 171.190 kb on - strand, within MPMX19_06405 at 171.190 kb on - strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.232 kb on + strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.233 kb on - strand, within MPMX19_06405 at 171.327 kb on + strand, within MPMX19_06405 at 171.535 kb on + strand at 171.535 kb on + strand at 171.535 kb on + strand at 171.535 kb on + strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.536 kb on - strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.593 kb on + strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.594 kb on - strand at 171.668 kb on + strand at 171.668 kb on + strand at 171.668 kb on + strand at 171.668 kb on + strand at 171.669 kb on - strand at 171.669 kb on - strand at 171.669 kb on - strand at 171.669 kb on - strand at 171.669 kb on - strand at 171.681 kb on + strand at 171.681 kb on + strand at 171.681 kb on + strand at 171.682 kb on - strand at 171.682 kb on - strand at 171.682 kb on - strand at 171.682 kb on - strand at 171.698 kb on + strand at 171.699 kb on - strand at 171.927 kb on + strand, within MPMX19_06406 at 171.927 kb on + strand, within MPMX19_06406 at 171.928 kb on - strand, within MPMX19_06406 at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.990 kb on + strand at 171.991 kb on - strand at 171.991 kb on - strand at 172.003 kb on - strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.110 kb on + strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.111 kb on - strand at 172.240 kb on + strand at 172.240 kb on + strand at 172.240 kb on + strand at 172.241 kb on - strand at 172.241 kb on - strand at 172.305 kb on + strand at 172.306 kb on - strand at 172.306 kb on - strand at 172.306 kb on - strand at 172.306 kb on - strand at 172.306 kb on - strand at 172.357 kb on + strand, within MPMX19_06407 at 172.358 kb on - strand, within MPMX19_06407 at 172.358 kb on - strand, within MPMX19_06407 at 172.380 kb on + strand, within MPMX19_06407 at 172.381 kb on - strand, within MPMX19_06407 at 172.394 kb on + strand, within MPMX19_06407 at 172.394 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.479 kb on + strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407 at 172.480 kb on - strand, within MPMX19_06407
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 170,117 + +0.2 170,364 + +1.2 170,364 + +0.4 170,364 + -0.2 170,365 - +0.0 170,365 - -1.4 170,365 - +0.4 170,541 + -0.1 170,541 + +0.8 170,542 - -0.4 170,542 - -2.0 170,542 - -2.9 170,544 + -1.0 170,544 + -0.6 170,544 + -1.9 170,544 + -0.2 170,544 + -0.2 170,544 + -0.1 170,544 + +1.8 170,544 + +0.8 170,544 + -0.4 170,544 + -0.5 170,544 + -0.4 170,544 + +0.6 170,544 + +0.1 170,544 + -0.1 170,544 + -1.4 170,544 + +0.4 170,545 - -1.3 170,545 - +2.6 170,545 - -0.9 170,545 - -1.8 170,545 - +0.6 170,545 - -2.2 170,545 - -0.5 170,545 - -0.5 170,556 + +0.4 170,557 - +0.7 170,557 - +0.6 170,557 - +0.8 170,705 + -0.2 170,705 + +0.2 170,705 + +1.8 170,705 + -0.8 170,705 + +0.5 170,705 + -0.2 170,705 + +1.8 170,705 + +0.0 170,705 + +0.0 170,705 + -1.3 170,705 + -0.7 170,705 + -0.9 170,705 + -0.1 170,705 + -0.8 170,705 + +0.8 170,705 + -0.8 170,705 + -0.3 170,705 + +0.4 170,705 + -0.8 170,706 - -0.8 170,706 - -1.6 170,706 - -1.0 170,706 - -0.1 170,706 - -1.9 170,706 - -0.6 170,706 - -1.8 170,706 - -1.0 170,706 - -0.8 170,706 - -0.2 170,706 - +0.0 170,706 - -0.4 170,706 - +0.2 170,706 - -0.3 170,706 - -0.6 170,706 - -1.6 170,706 - +0.6 170,706 - -0.7 170,706 - -0.8 170,706 - -2.2 170,827 + +0.4 170,827 + -0.2 170,827 + -0.7 170,827 + +0.2 170,827 + -0.8 170,828 - -1.1 170,828 - -2.1 170,828 - +0.3 170,828 - +0.1 170,910 + -0.8 170,911 - -0.2 171,008 + -2.1 171,008 + +0.6 171,009 - +1.8 171,009 - -1.1 171,009 - -0.7 171,009 - -0.7 171,052 + -0.1 171,052 + -0.9 171,052 + +0.8 171,053 - +1.0 171,064 + -1.6 171,064 + +0.7 171,064 + +0.1 171,064 + -1.4 171,064 + -1.8 171,064 + -0.6 171,065 - -1.2 171,065 - -0.2 171,065 - +0.8 171,065 - -0.8 171,065 - +0.2 171,065 - -0.8 171,065 - -1.6 171,065 - +0.2 171,065 - -2.1 171,065 - -1.2 171,065 - -1.8 171,065 - +0.8 171,065 - -2.1 171,103 + MPMX19_06405 0.11 +0.8 171,103 + MPMX19_06405 0.11 +3.0 171,104 - MPMX19_06405 0.11 -0.3 171,104 - MPMX19_06405 0.11 -2.4 171,189 + MPMX19_06405 0.29 -0.1 171,189 + MPMX19_06405 0.29 -0.3 171,190 - MPMX19_06405 0.30 +0.2 171,190 - MPMX19_06405 0.30 +0.3 171,190 - MPMX19_06405 0.30 -0.5 171,232 + MPMX19_06405 0.39 +0.7 171,232 + MPMX19_06405 0.39 -1.0 171,232 + MPMX19_06405 0.39 +0.8 171,232 + MPMX19_06405 0.39 -1.0 171,232 + MPMX19_06405 0.39 -0.3 171,232 + MPMX19_06405 0.39 -0.2 171,232 + MPMX19_06405 0.39 +1.2 171,233 - MPMX19_06405 0.39 -2.2 171,233 - MPMX19_06405 0.39 -1.4 171,233 - MPMX19_06405 0.39 -0.1 171,233 - MPMX19_06405 0.39 +0.2 171,233 - MPMX19_06405 0.39 -0.2 171,233 - MPMX19_06405 0.39 -0.7 171,233 - MPMX19_06405 0.39 -0.0 171,233 - MPMX19_06405 0.39 -0.8 171,327 + MPMX19_06405 0.59 +0.2 171,535 + -0.2 171,535 + -2.9 171,535 + +0.2 171,535 + -1.4 171,536 - -1.1 171,536 - +0.2 171,536 - +0.9 171,536 - +1.3 171,536 - +0.4 171,536 - +1.3 171,536 - +0.3 171,593 + -1.1 171,593 + -1.6 171,593 + -1.6 171,593 + -0.3 171,593 + +0.2 171,593 + -0.4 171,593 + -0.5 171,593 + +1.8 171,593 + +1.1 171,593 + +1.0 171,593 + +0.9 171,593 + +0.5 171,593 + -1.0 171,593 + -0.8 171,593 + -0.8 171,593 + -0.9 171,593 + +1.5 171,593 + +0.6 171,593 + -0.9 171,593 + -0.2 171,594 - -0.7 171,594 - +0.2 171,594 - -1.2 171,594 - +0.0 171,594 - -1.0 171,594 - -0.1 171,594 - -0.9 171,594 - +0.5 171,594 - +0.0 171,594 - -0.5 171,594 - -0.9 171,594 - -2.6 171,594 - -0.2 171,594 - +0.2 171,594 - -0.1 171,594 - -1.5 171,594 - -2.2 171,594 - -0.4 171,594 - -2.5 171,594 - +0.7 171,668 + -0.6 171,668 + -0.8 171,668 + +0.4 171,668 + -1.6 171,669 - +0.7 171,669 - -0.3 171,669 - +0.5 171,669 - -1.0 171,669 - +1.6 171,681 + -1.3 171,681 + -1.1 171,681 + -0.4 171,682 - -0.5 171,682 - +1.0 171,682 - -1.1 171,682 - -0.3 171,698 + -1.0 171,699 - -1.9 171,927 + MPMX19_06406 0.75 -2.3 171,927 + MPMX19_06406 0.75 -0.8 171,928 - MPMX19_06406 0.76 -1.0 171,990 + -2.4 171,990 + -0.5 171,990 + +0.6 171,990 + -0.5 171,990 + +1.1 171,991 - -0.4 171,991 - -0.4 172,003 - -0.7 172,110 + +1.1 172,110 + -2.4 172,110 + -1.4 172,110 + +0.1 172,110 + -0.8 172,110 + -0.5 172,110 + -0.7 172,110 + -0.6 172,110 + -1.0 172,110 + -0.3 172,110 + -0.4 172,110 + -0.1 172,110 + +0.0 172,111 - -1.4 172,111 - -0.4 172,111 - -0.7 172,111 - -0.0 172,111 - +0.5 172,111 - -0.4 172,111 - -0.6 172,111 - +0.2 172,111 - +0.9 172,111 - +0.8 172,111 - +1.1 172,111 - +0.0 172,111 - -2.6 172,111 - +0.6 172,111 - -1.0 172,111 - +2.0 172,111 - -0.3 172,111 - -1.9 172,240 + -0.0 172,240 + -0.0 172,240 + -0.7 172,241 - -0.1 172,241 - -2.4 172,305 + -0.6 172,306 - -1.1 172,306 - -1.3 172,306 - -2.1 172,306 - -0.0 172,306 - +0.0 172,357 + MPMX19_06407 0.11 -1.6 172,358 - MPMX19_06407 0.11 -0.8 172,358 - MPMX19_06407 0.11 -1.6 172,380 + MPMX19_06407 0.12 -0.9 172,381 - MPMX19_06407 0.12 +1.2 172,394 + MPMX19_06407 0.12 -0.4 172,394 + MPMX19_06407 0.12 -1.0 172,479 + MPMX19_06407 0.15 -0.2 172,479 + MPMX19_06407 0.15 -0.4 172,479 + MPMX19_06407 0.15 -0.1 172,479 + MPMX19_06407 0.15 -1.4 172,479 + MPMX19_06407 0.15 -1.6 172,479 + MPMX19_06407 0.15 -0.5 172,479 + MPMX19_06407 0.15 -1.3 172,479 + MPMX19_06407 0.15 -0.3 172,479 + MPMX19_06407 0.15 +1.4 172,479 + MPMX19_06407 0.15 +0.9 172,479 + MPMX19_06407 0.15 -0.1 172,479 + MPMX19_06407 0.15 +0.6 172,479 + MPMX19_06407 0.15 -0.4 172,479 + MPMX19_06407 0.15 -1.8 172,479 + MPMX19_06407 0.15 -0.1 172,479 + MPMX19_06407 0.15 -0.5 172,479 + MPMX19_06407 0.15 -0.2 172,479 + MPMX19_06407 0.15 -0.8 172,480 - MPMX19_06407 0.15 -2.9 172,480 - MPMX19_06407 0.15 -0.4 172,480 - MPMX19_06407 0.15 -0.6 172,480 - MPMX19_06407 0.15 +0.3 172,480 - MPMX19_06407 0.15 +0.3 172,480 - MPMX19_06407 0.15 -0.6 172,480 - MPMX19_06407 0.15 -0.5 172,480 - MPMX19_06407 0.15 -2.3 172,480 - MPMX19_06407 0.15 -0.2 172,480 - MPMX19_06407 0.15 -1.5 172,480 - MPMX19_06407 0.15 -1.2
Or see this region's nucleotide sequence