Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06384 and MPMX19_06385 are separated by 313 nucleotides MPMX19_06385 and MPMX19_06386 are separated by 10 nucleotides MPMX19_06386 and MPMX19_06387 are separated by 111 nucleotides MPMX19_06387 and MPMX19_06388 are separated by 9 nucleotides
MPMX19_06384: MPMX19_06384 - Cadmium, cobalt and zinc/H(+)-K(+) antiporter, at 152,667 to 153,656
_06384
MPMX19_06385: MPMX19_06385 - hypothetical protein, at 153,970 to 154,146
_06385
MPMX19_06386: MPMX19_06386 - hypothetical protein, at 154,157 to 154,423
_06386
MPMX19_06387: MPMX19_06387 - hypothetical protein, at 154,535 to 155,488
_06387
MPMX19_06388: MPMX19_06388 - hypothetical protein, at 155,498 to 156,823
_06388
Position (kb)
154
155
156 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 153.599 kb on + strand at 153.599 kb on + strand at 153.605 kb on + strand at 153.606 kb on - strand at 153.679 kb on + strand at 153.679 kb on + strand at 153.680 kb on - strand at 153.680 kb on - strand at 153.733 kb on + strand at 153.733 kb on + strand at 153.733 kb on + strand at 153.734 kb on - strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.856 kb on + strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.857 kb on - strand at 153.971 kb on + strand at 153.972 kb on - strand at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.085 kb on + strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.086 kb on - strand, within MPMX19_06385 at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.158 kb on + strand at 154.159 kb on - strand at 154.159 kb on - strand at 154.159 kb on - strand at 154.164 kb on + strand at 154.165 kb on - strand at 154.165 kb on - strand at 154.165 kb on - strand at 154.249 kb on + strand, within MPMX19_06386 at 154.250 kb on - strand, within MPMX19_06386 at 154.436 kb on - strand at 154.737 kb on + strand, within MPMX19_06387 at 154.737 kb on + strand, within MPMX19_06387 at 154.737 kb on + strand, within MPMX19_06387 at 154.737 kb on + strand, within MPMX19_06387 at 154.737 kb on + strand, within MPMX19_06387 at 154.828 kb on + strand, within MPMX19_06387 at 154.828 kb on + strand, within MPMX19_06387 at 154.829 kb on - strand, within MPMX19_06387 at 155.169 kb on + strand, within MPMX19_06387 at 155.274 kb on - strand, within MPMX19_06387 at 155.349 kb on + strand, within MPMX19_06387 at 155.349 kb on + strand, within MPMX19_06387 at 155.350 kb on - strand, within MPMX19_06387 at 155.350 kb on - strand, within MPMX19_06387 at 155.350 kb on - strand, within MPMX19_06387 at 155.350 kb on - strand, within MPMX19_06387 at 155.379 kb on + strand, within MPMX19_06387 at 155.379 kb on + strand, within MPMX19_06387 at 155.380 kb on - strand, within MPMX19_06387 at 155.421 kb on + strand at 155.421 kb on + strand at 155.422 kb on - strand at 155.422 kb on - strand at 155.422 kb on - strand at 155.754 kb on + strand, within MPMX19_06388 at 155.754 kb on + strand, within MPMX19_06388 at 155.754 kb on + strand, within MPMX19_06388 at 155.755 kb on - strand, within MPMX19_06388 at 155.755 kb on - strand, within MPMX19_06388 at 155.755 kb on - strand, within MPMX19_06388 at 155.755 kb on - strand, within MPMX19_06388 at 155.755 kb on - strand, within MPMX19_06388 at 156.129 kb on + strand, within MPMX19_06388 at 156.192 kb on + strand, within MPMX19_06388 at 156.192 kb on + strand, within MPMX19_06388 at 156.193 kb on - strand, within MPMX19_06388 at 156.193 kb on - strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.222 kb on + strand, within MPMX19_06388 at 156.223 kb on - strand, within MPMX19_06388 at 156.223 kb on - strand, within MPMX19_06388 at 156.223 kb on - strand, within MPMX19_06388 at 156.223 kb on - strand, within MPMX19_06388 at 156.223 kb on - strand, within MPMX19_06388 at 156.223 kb on - strand, within MPMX19_06388 at 156.223 kb on - strand, within MPMX19_06388 at 156.223 kb on - strand, within MPMX19_06388 at 156.393 kb on + strand, within MPMX19_06388 at 156.394 kb on - strand, within MPMX19_06388 at 156.426 kb on + strand, within MPMX19_06388 at 156.426 kb on + strand, within MPMX19_06388 at 156.426 kb on + strand, within MPMX19_06388 at 156.426 kb on + strand, within MPMX19_06388 at 156.427 kb on - strand, within MPMX19_06388 at 156.427 kb on - strand, within MPMX19_06388 at 156.427 kb on - strand, within MPMX19_06388 at 156.427 kb on - strand, within MPMX19_06388 at 156.427 kb on - strand, within MPMX19_06388 at 156.427 kb on - strand, within MPMX19_06388
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 153,599 + -1.5 153,599 + +0.0 153,605 + -0.6 153,606 - -1.4 153,679 + -0.3 153,679 + -0.5 153,680 - +0.8 153,680 - -0.8 153,733 + -0.6 153,733 + -0.7 153,733 + +0.0 153,734 - -2.6 153,856 + +1.3 153,856 + -0.5 153,856 + -1.5 153,856 + +1.8 153,856 + +0.8 153,856 + +0.8 153,856 + -1.0 153,856 + +0.0 153,856 + +1.4 153,856 + -0.5 153,856 + -0.7 153,856 + -0.6 153,857 - -0.6 153,857 - -1.9 153,857 - -0.4 153,857 - -0.2 153,857 - -0.7 153,857 - -1.5 153,857 - +0.8 153,971 + +0.3 153,972 - -0.1 154,085 + MPMX19_06385 0.65 -0.2 154,085 + MPMX19_06385 0.65 -0.2 154,085 + MPMX19_06385 0.65 -1.5 154,085 + MPMX19_06385 0.65 -0.2 154,085 + MPMX19_06385 0.65 -0.8 154,086 - MPMX19_06385 0.66 -0.5 154,086 - MPMX19_06385 0.66 -0.8 154,086 - MPMX19_06385 0.66 +1.8 154,086 - MPMX19_06385 0.66 +1.0 154,158 + +0.4 154,158 + +0.0 154,158 + +1.5 154,158 + +0.2 154,158 + -0.5 154,158 + -0.3 154,159 - -1.5 154,159 - +1.8 154,159 - +0.5 154,164 + -1.0 154,165 - -1.4 154,165 - +0.5 154,165 - -1.5 154,249 + MPMX19_06386 0.34 -1.1 154,250 - MPMX19_06386 0.35 +1.5 154,436 - +0.4 154,737 + MPMX19_06387 0.21 +0.3 154,737 + MPMX19_06387 0.21 -0.5 154,737 + MPMX19_06387 0.21 +0.2 154,737 + MPMX19_06387 0.21 -2.3 154,737 + MPMX19_06387 0.21 -1.1 154,828 + MPMX19_06387 0.31 -2.0 154,828 + MPMX19_06387 0.31 -0.1 154,829 - MPMX19_06387 0.31 -0.2 155,169 + MPMX19_06387 0.66 -0.2 155,274 - MPMX19_06387 0.77 -0.4 155,349 + MPMX19_06387 0.85 -2.2 155,349 + MPMX19_06387 0.85 -1.9 155,350 - MPMX19_06387 0.85 -0.3 155,350 - MPMX19_06387 0.85 -1.2 155,350 - MPMX19_06387 0.85 +0.4 155,350 - MPMX19_06387 0.85 -0.8 155,379 + MPMX19_06387 0.88 -0.5 155,379 + MPMX19_06387 0.88 +0.2 155,380 - MPMX19_06387 0.89 -0.4 155,421 + +1.2 155,421 + -0.6 155,422 - -1.4 155,422 - -0.8 155,422 - +2.0 155,754 + MPMX19_06388 0.19 -0.2 155,754 + MPMX19_06388 0.19 -2.2 155,754 + MPMX19_06388 0.19 +0.6 155,755 - MPMX19_06388 0.19 -1.2 155,755 - MPMX19_06388 0.19 -0.5 155,755 - MPMX19_06388 0.19 +0.0 155,755 - MPMX19_06388 0.19 +2.0 155,755 - MPMX19_06388 0.19 +1.8 156,129 + MPMX19_06388 0.48 -2.3 156,192 + MPMX19_06388 0.52 +0.2 156,192 + MPMX19_06388 0.52 -0.8 156,193 - MPMX19_06388 0.52 +1.1 156,193 - MPMX19_06388 0.52 +0.2 156,222 + MPMX19_06388 0.55 +0.2 156,222 + MPMX19_06388 0.55 +0.6 156,222 + MPMX19_06388 0.55 -0.7 156,222 + MPMX19_06388 0.55 -0.9 156,222 + MPMX19_06388 0.55 +0.2 156,222 + MPMX19_06388 0.55 +0.5 156,222 + MPMX19_06388 0.55 -1.2 156,222 + MPMX19_06388 0.55 -1.2 156,222 + MPMX19_06388 0.55 +0.3 156,223 - MPMX19_06388 0.55 +0.2 156,223 - MPMX19_06388 0.55 +1.6 156,223 - MPMX19_06388 0.55 +0.2 156,223 - MPMX19_06388 0.55 +0.1 156,223 - MPMX19_06388 0.55 +0.2 156,223 - MPMX19_06388 0.55 -1.1 156,223 - MPMX19_06388 0.55 +1.2 156,223 - MPMX19_06388 0.55 -0.9 156,393 + MPMX19_06388 0.67 -0.4 156,394 - MPMX19_06388 0.68 -0.2 156,426 + MPMX19_06388 0.70 -1.1 156,426 + MPMX19_06388 0.70 +1.2 156,426 + MPMX19_06388 0.70 -0.4 156,426 + MPMX19_06388 0.70 +0.0 156,427 - MPMX19_06388 0.70 -0.4 156,427 - MPMX19_06388 0.70 +0.5 156,427 - MPMX19_06388 0.70 -2.4 156,427 - MPMX19_06388 0.70 +0.2 156,427 - MPMX19_06388 0.70 -1.4 156,427 - MPMX19_06388 0.70 -0.1
Or see this region's nucleotide sequence