Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06314 and MPMX19_06315 are separated by 275 nucleotides MPMX19_06315 and MPMX19_06316 are separated by 213 nucleotides MPMX19_06316 and MPMX19_06317 are separated by 64 nucleotides MPMX19_06317 and MPMX19_06318 are separated by 219 nucleotides
MPMX19_06314: MPMX19_06314 - hypothetical protein, at 76,186 to 76,656
_06314
MPMX19_06315: MPMX19_06315 - ISL3 family transposase ISAli18, at 76,932 to 77,318
_06315
MPMX19_06316: MPMX19_06316 - hypothetical protein, at 77,532 to 78,440
_06316
MPMX19_06317: MPMX19_06317 - hypothetical protein, at 78,505 to 78,777
_06317
MPMX19_06318: MPMX19_06318 - hypothetical protein, at 78,997 to 79,698
_06318
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.585 kb on + strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.586 kb on - strand, within MPMX19_06314 at 76.600 kb on + strand, within MPMX19_06314 at 76.601 kb on - strand, within MPMX19_06314 at 76.789 kb on - strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.814 kb on + strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 76.815 kb on - strand at 77.221 kb on + strand, within MPMX19_06315 at 77.221 kb on + strand, within MPMX19_06315 at 77.221 kb on + strand, within MPMX19_06315 at 77.222 kb on - strand, within MPMX19_06315 at 77.488 kb on + strand at 77.488 kb on + strand at 77.489 kb on - strand at 77.661 kb on + strand, within MPMX19_06316 at 77.661 kb on + strand, within MPMX19_06316 at 77.745 kb on + strand, within MPMX19_06316 at 77.745 kb on + strand, within MPMX19_06316 at 77.745 kb on + strand, within MPMX19_06316 at 77.746 kb on - strand, within MPMX19_06316 at 77.746 kb on - strand, within MPMX19_06316 at 77.746 kb on - strand, within MPMX19_06316 at 77.746 kb on - strand, within MPMX19_06316 at 77.746 kb on - strand, within MPMX19_06316 at 77.994 kb on + strand, within MPMX19_06316 at 77.994 kb on + strand, within MPMX19_06316 at 77.994 kb on + strand, within MPMX19_06316 at 77.995 kb on - strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.027 kb on + strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.028 kb on - strand, within MPMX19_06316 at 78.206 kb on + strand, within MPMX19_06316 at 78.206 kb on + strand, within MPMX19_06316 at 78.206 kb on + strand, within MPMX19_06316 at 78.683 kb on + strand, within MPMX19_06317 at 78.777 kb on + strand at 78.778 kb on - strand at 78.778 kb on - strand at 78.828 kb on + strand at 78.828 kb on + strand at 78.828 kb on + strand at 78.828 kb on + strand at 78.829 kb on - strand at 78.829 kb on - strand at 78.829 kb on - strand at 78.829 kb on - strand at 78.833 kb on + strand at 78.833 kb on + strand at 78.833 kb on + strand at 78.834 kb on - strand at 78.834 kb on - strand at 78.834 kb on - strand at 78.834 kb on - strand at 78.834 kb on - strand at 78.834 kb on - strand at 78.854 kb on + strand at 78.854 kb on + strand at 78.855 kb on - strand at 78.902 kb on + strand at 78.902 kb on + strand at 78.902 kb on + strand at 78.902 kb on + strand at 78.902 kb on + strand at 78.903 kb on - strand at 78.903 kb on - strand at 78.906 kb on - strand at 78.906 kb on - strand at 79.049 kb on + strand at 79.050 kb on - strand at 79.111 kb on + strand, within MPMX19_06318 at 79.111 kb on + strand, within MPMX19_06318 at 79.112 kb on - strand, within MPMX19_06318 at 79.112 kb on - strand, within MPMX19_06318 at 79.146 kb on + strand, within MPMX19_06318 at 79.146 kb on + strand, within MPMX19_06318 at 79.146 kb on + strand, within MPMX19_06318 at 79.147 kb on - strand, within MPMX19_06318 at 79.147 kb on - strand, within MPMX19_06318 at 79.375 kb on + strand, within MPMX19_06318 at 79.375 kb on + strand, within MPMX19_06318 at 79.375 kb on + strand, within MPMX19_06318 at 79.376 kb on - strand, within MPMX19_06318 at 79.376 kb on - strand, within MPMX19_06318 at 79.376 kb on - strand, within MPMX19_06318 at 79.376 kb on - strand, within MPMX19_06318
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 76,585 + MPMX19_06314 0.85 -1.0 76,585 + MPMX19_06314 0.85 -2.0 76,585 + MPMX19_06314 0.85 +0.2 76,585 + MPMX19_06314 0.85 -1.6 76,585 + MPMX19_06314 0.85 -1.4 76,585 + MPMX19_06314 0.85 -0.8 76,585 + MPMX19_06314 0.85 +0.1 76,585 + MPMX19_06314 0.85 -1.4 76,585 + MPMX19_06314 0.85 -0.3 76,585 + MPMX19_06314 0.85 +0.6 76,585 + MPMX19_06314 0.85 -0.5 76,585 + MPMX19_06314 0.85 +0.2 76,585 + MPMX19_06314 0.85 -1.4 76,585 + MPMX19_06314 0.85 -0.4 76,586 - MPMX19_06314 0.85 -1.2 76,586 - MPMX19_06314 0.85 -0.0 76,586 - MPMX19_06314 0.85 -1.5 76,586 - MPMX19_06314 0.85 +0.2 76,586 - MPMX19_06314 0.85 -0.4 76,586 - MPMX19_06314 0.85 -1.5 76,586 - MPMX19_06314 0.85 -0.5 76,586 - MPMX19_06314 0.85 +0.1 76,586 - MPMX19_06314 0.85 +0.4 76,600 + MPMX19_06314 0.88 +0.4 76,601 - MPMX19_06314 0.88 +0.5 76,789 - -0.2 76,814 + -0.9 76,814 + -0.4 76,814 + +0.5 76,814 + -0.1 76,814 + -1.6 76,815 - -0.3 76,815 - +0.4 76,815 - +0.3 76,815 - -1.4 76,815 - -0.2 76,815 - -2.2 76,815 - -2.4 76,815 - -0.2 76,815 - -1.5 77,221 + MPMX19_06315 0.75 +0.1 77,221 + MPMX19_06315 0.75 +1.2 77,221 + MPMX19_06315 0.75 -0.2 77,222 - MPMX19_06315 0.75 +0.3 77,488 + +0.4 77,488 + -3.1 77,489 - -0.3 77,661 + MPMX19_06316 0.14 +0.3 77,661 + MPMX19_06316 0.14 -0.7 77,745 + MPMX19_06316 0.23 +0.2 77,745 + MPMX19_06316 0.23 -0.6 77,745 + MPMX19_06316 0.23 -0.2 77,746 - MPMX19_06316 0.24 -0.7 77,746 - MPMX19_06316 0.24 +0.2 77,746 - MPMX19_06316 0.24 -1.2 77,746 - MPMX19_06316 0.24 -1.2 77,746 - MPMX19_06316 0.24 -0.8 77,994 + MPMX19_06316 0.51 -1.0 77,994 + MPMX19_06316 0.51 +0.5 77,994 + MPMX19_06316 0.51 +0.2 77,995 - MPMX19_06316 0.51 -0.4 78,027 + MPMX19_06316 0.54 +0.5 78,027 + MPMX19_06316 0.54 -1.2 78,027 + MPMX19_06316 0.54 +0.5 78,027 + MPMX19_06316 0.54 -1.8 78,027 + MPMX19_06316 0.54 +0.8 78,027 + MPMX19_06316 0.54 -1.4 78,027 + MPMX19_06316 0.54 +1.4 78,027 + MPMX19_06316 0.54 -0.1 78,027 + MPMX19_06316 0.54 -1.5 78,027 + MPMX19_06316 0.54 -1.6 78,027 + MPMX19_06316 0.54 -0.2 78,027 + MPMX19_06316 0.54 -0.6 78,027 + MPMX19_06316 0.54 +0.0 78,027 + MPMX19_06316 0.54 -0.9 78,027 + MPMX19_06316 0.54 +0.8 78,027 + MPMX19_06316 0.54 -0.6 78,027 + MPMX19_06316 0.54 +0.6 78,027 + MPMX19_06316 0.54 +0.0 78,027 + MPMX19_06316 0.54 -0.1 78,027 + MPMX19_06316 0.54 -2.1 78,027 + MPMX19_06316 0.54 -1.1 78,027 + MPMX19_06316 0.54 -0.8 78,027 + MPMX19_06316 0.54 +0.2 78,027 + MPMX19_06316 0.54 -1.9 78,027 + MPMX19_06316 0.54 -1.2 78,027 + MPMX19_06316 0.54 +0.8 78,027 + MPMX19_06316 0.54 -0.8 78,027 + MPMX19_06316 0.54 -0.9 78,027 + MPMX19_06316 0.54 -1.1 78,027 + MPMX19_06316 0.54 -2.6 78,027 + MPMX19_06316 0.54 -1.2 78,027 + MPMX19_06316 0.54 -0.2 78,027 + MPMX19_06316 0.54 -0.8 78,028 - MPMX19_06316 0.55 -0.7 78,028 - MPMX19_06316 0.55 -1.8 78,028 - MPMX19_06316 0.55 -3.4 78,028 - MPMX19_06316 0.55 -2.0 78,028 - MPMX19_06316 0.55 -0.6 78,028 - MPMX19_06316 0.55 -1.1 78,028 - MPMX19_06316 0.55 +0.3 78,028 - MPMX19_06316 0.55 -1.6 78,028 - MPMX19_06316 0.55 -0.9 78,028 - MPMX19_06316 0.55 +2.3 78,028 - MPMX19_06316 0.55 +0.1 78,028 - MPMX19_06316 0.55 -1.2 78,206 + MPMX19_06316 0.74 +1.0 78,206 + MPMX19_06316 0.74 -0.4 78,206 + MPMX19_06316 0.74 -0.3 78,683 + MPMX19_06317 0.65 +1.4 78,777 + -0.8 78,778 - -0.6 78,778 - -0.5 78,828 + -0.2 78,828 + -0.5 78,828 + -2.1 78,828 + -1.8 78,829 - +0.3 78,829 - -1.2 78,829 - +0.4 78,829 - +0.2 78,833 + +0.2 78,833 + -1.9 78,833 + +0.3 78,834 - +0.4 78,834 - -0.5 78,834 - -1.2 78,834 - +0.0 78,834 - -0.2 78,834 - -0.2 78,854 + -0.2 78,854 + -0.4 78,855 - -0.9 78,902 + +0.1 78,902 + +0.2 78,902 + -1.4 78,902 + +0.0 78,902 + -1.8 78,903 - -1.2 78,903 - -1.9 78,906 - -0.4 78,906 - -0.6 79,049 + +0.4 79,050 - +0.1 79,111 + MPMX19_06318 0.16 -1.1 79,111 + MPMX19_06318 0.16 -0.8 79,112 - MPMX19_06318 0.16 -1.5 79,112 - MPMX19_06318 0.16 +0.3 79,146 + MPMX19_06318 0.21 -0.1 79,146 + MPMX19_06318 0.21 +0.6 79,146 + MPMX19_06318 0.21 +0.5 79,147 - MPMX19_06318 0.21 -2.1 79,147 - MPMX19_06318 0.21 -0.9 79,375 + MPMX19_06318 0.54 +0.6 79,375 + MPMX19_06318 0.54 -0.1 79,375 + MPMX19_06318 0.54 -1.0 79,376 - MPMX19_06318 0.54 -1.5 79,376 - MPMX19_06318 0.54 -1.5 79,376 - MPMX19_06318 0.54 +0.4 79,376 - MPMX19_06318 0.54 +0.2
Or see this region's nucleotide sequence