Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06232 and MPMX19_06233 are separated by 158 nucleotides MPMX19_06233 and MPMX19_06234 are separated by 31 nucleotides MPMX19_06234 and MPMX19_06235 are separated by 149 nucleotides
MPMX19_06232: MPMX19_06232 - Pyruvate/proton symporter BtsT, at 420,879 to 422,684
_06232
MPMX19_06233: MPMX19_06233 - putative oxidoreductase YgfF, at 422,843 to 423,604
_06233
MPMX19_06234: MPMX19_06234 - hypothetical protein, at 423,636 to 424,832
_06234
MPMX19_06235: MPMX19_06235 - Glycine cleavage system transcriptional activator, at 424,982 to 425,878
_06235
Position (kb) 423
424
425 Strain fitness (log2 ratio) -2
-1
0
1 at 422.718 kb on + strand at 422.719 kb on - strand at 422.719 kb on - strand at 422.838 kb on + strand at 422.838 kb on + strand at 422.838 kb on + strand at 422.839 kb on - strand at 422.839 kb on - strand at 422.839 kb on - strand at 422.839 kb on - strand at 422.839 kb on - strand at 423.018 kb on + strand, within MPMX19_06233 at 423.018 kb on + strand, within MPMX19_06233 at 423.018 kb on + strand, within MPMX19_06233 at 423.018 kb on + strand, within MPMX19_06233 at 423.018 kb on + strand, within MPMX19_06233 at 423.018 kb on + strand, within MPMX19_06233 at 423.018 kb on + strand, within MPMX19_06233 at 423.018 kb on + strand, within MPMX19_06233 at 423.018 kb on + strand, within MPMX19_06233 at 423.019 kb on - strand, within MPMX19_06233 at 423.019 kb on - strand, within MPMX19_06233 at 423.019 kb on - strand, within MPMX19_06233 at 423.019 kb on - strand, within MPMX19_06233 at 423.019 kb on - strand, within MPMX19_06233 at 423.019 kb on - strand, within MPMX19_06233 at 423.019 kb on - strand, within MPMX19_06233 at 423.120 kb on + strand, within MPMX19_06233 at 423.120 kb on + strand, within MPMX19_06233 at 423.120 kb on + strand, within MPMX19_06233 at 423.120 kb on + strand, within MPMX19_06233 at 423.120 kb on + strand, within MPMX19_06233 at 423.121 kb on - strand, within MPMX19_06233 at 423.121 kb on - strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.129 kb on + strand, within MPMX19_06233 at 423.130 kb on - strand, within MPMX19_06233 at 423.130 kb on - strand, within MPMX19_06233 at 423.130 kb on - strand, within MPMX19_06233 at 423.130 kb on - strand, within MPMX19_06233 at 423.130 kb on - strand, within MPMX19_06233 at 423.130 kb on - strand, within MPMX19_06233 at 423.510 kb on + strand, within MPMX19_06233 at 423.510 kb on + strand, within MPMX19_06233 at 423.510 kb on + strand, within MPMX19_06233 at 423.510 kb on + strand, within MPMX19_06233 at 423.510 kb on + strand, within MPMX19_06233 at 423.511 kb on - strand, within MPMX19_06233 at 423.511 kb on - strand, within MPMX19_06233 at 423.620 kb on + strand at 423.620 kb on + strand at 423.621 kb on - strand at 423.793 kb on + strand, within MPMX19_06234 at 423.794 kb on - strand, within MPMX19_06234 at 423.835 kb on + strand, within MPMX19_06234 at 423.835 kb on + strand, within MPMX19_06234 at 423.835 kb on + strand, within MPMX19_06234 at 423.835 kb on + strand, within MPMX19_06234 at 423.835 kb on + strand, within MPMX19_06234 at 423.835 kb on + strand, within MPMX19_06234 at 423.835 kb on + strand, within MPMX19_06234 at 423.836 kb on - strand, within MPMX19_06234 at 423.836 kb on - strand, within MPMX19_06234 at 423.836 kb on - strand, within MPMX19_06234 at 423.836 kb on - strand, within MPMX19_06234 at 423.836 kb on - strand, within MPMX19_06234 at 423.836 kb on - strand, within MPMX19_06234 at 423.836 kb on - strand, within MPMX19_06234 at 423.892 kb on + strand, within MPMX19_06234 at 423.892 kb on + strand, within MPMX19_06234 at 423.892 kb on + strand, within MPMX19_06234 at 423.892 kb on + strand, within MPMX19_06234 at 423.893 kb on - strand, within MPMX19_06234 at 423.893 kb on - strand, within MPMX19_06234 at 423.893 kb on - strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.162 kb on + strand, within MPMX19_06234 at 424.163 kb on - strand, within MPMX19_06234 at 424.163 kb on - strand, within MPMX19_06234 at 424.163 kb on - strand, within MPMX19_06234 at 424.163 kb on - strand, within MPMX19_06234 at 424.163 kb on - strand, within MPMX19_06234 at 424.163 kb on - strand, within MPMX19_06234 at 424.412 kb on + strand, within MPMX19_06234 at 424.412 kb on + strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.413 kb on - strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.414 kb on + strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.415 kb on - strand, within MPMX19_06234 at 424.447 kb on + strand, within MPMX19_06234 at 424.447 kb on + strand, within MPMX19_06234 at 424.666 kb on + strand, within MPMX19_06234 at 424.696 kb on + strand, within MPMX19_06234 at 424.696 kb on + strand, within MPMX19_06234 at 424.696 kb on + strand, within MPMX19_06234 at 424.696 kb on + strand, within MPMX19_06234 at 424.697 kb on - strand, within MPMX19_06234 at 424.738 kb on + strand at 424.738 kb on + strand at 424.738 kb on + strand at 424.738 kb on + strand at 424.738 kb on + strand at 424.738 kb on + strand at 424.738 kb on + strand at 424.739 kb on - strand at 424.739 kb on - strand at 424.739 kb on - strand at 424.739 kb on - strand at 424.739 kb on - strand at 424.739 kb on - strand at 424.739 kb on - strand at 424.739 kb on - strand at 424.739 kb on - strand at 424.754 kb on - strand at 424.896 kb on + strand at 424.919 kb on + strand at 424.920 kb on - strand at 424.922 kb on + strand at 424.940 kb on + strand at 425.045 kb on + strand at 425.045 kb on + strand at 425.045 kb on + strand at 425.045 kb on + strand at 425.045 kb on + strand at 425.046 kb on - strand at 425.046 kb on - strand at 425.046 kb on - strand at 425.046 kb on - strand at 425.324 kb on + strand, within MPMX19_06235 at 425.325 kb on - strand, within MPMX19_06235 at 425.643 kb on + strand, within MPMX19_06235 at 425.643 kb on + strand, within MPMX19_06235 at 425.644 kb on - strand, within MPMX19_06235 at 425.644 kb on - strand, within MPMX19_06235 at 425.644 kb on - strand, within MPMX19_06235 at 425.787 kb on - strand, within MPMX19_06235 at 425.787 kb on - strand, within MPMX19_06235 at 425.787 kb on - strand, within MPMX19_06235
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 422,718 + +0.4 422,719 - -1.7 422,719 - -2.1 422,838 + -0.1 422,838 + -0.2 422,838 + -0.5 422,839 - +0.3 422,839 - -0.3 422,839 - -1.2 422,839 - -0.6 422,839 - -1.1 423,018 + MPMX19_06233 0.23 +0.2 423,018 + MPMX19_06233 0.23 -1.5 423,018 + MPMX19_06233 0.23 -2.1 423,018 + MPMX19_06233 0.23 +0.6 423,018 + MPMX19_06233 0.23 +0.2 423,018 + MPMX19_06233 0.23 +0.8 423,018 + MPMX19_06233 0.23 -0.6 423,018 + MPMX19_06233 0.23 -2.6 423,018 + MPMX19_06233 0.23 +0.0 423,019 - MPMX19_06233 0.23 -1.9 423,019 - MPMX19_06233 0.23 -2.2 423,019 - MPMX19_06233 0.23 +0.2 423,019 - MPMX19_06233 0.23 +1.2 423,019 - MPMX19_06233 0.23 -0.6 423,019 - MPMX19_06233 0.23 -0.8 423,019 - MPMX19_06233 0.23 -1.9 423,120 + MPMX19_06233 0.36 -1.2 423,120 + MPMX19_06233 0.36 -0.2 423,120 + MPMX19_06233 0.36 -0.3 423,120 + MPMX19_06233 0.36 +0.1 423,120 + MPMX19_06233 0.36 -1.2 423,121 - MPMX19_06233 0.36 -1.4 423,121 - MPMX19_06233 0.36 +0.5 423,129 + MPMX19_06233 0.38 +0.3 423,129 + MPMX19_06233 0.38 +1.1 423,129 + MPMX19_06233 0.38 -1.1 423,129 + MPMX19_06233 0.38 -0.2 423,129 + MPMX19_06233 0.38 -0.5 423,129 + MPMX19_06233 0.38 -1.2 423,129 + MPMX19_06233 0.38 -1.4 423,129 + MPMX19_06233 0.38 -1.2 423,129 + MPMX19_06233 0.38 -1.4 423,129 + MPMX19_06233 0.38 -1.7 423,129 + MPMX19_06233 0.38 -1.0 423,130 - MPMX19_06233 0.38 -1.2 423,130 - MPMX19_06233 0.38 +0.6 423,130 - MPMX19_06233 0.38 -2.4 423,130 - MPMX19_06233 0.38 +1.3 423,130 - MPMX19_06233 0.38 -0.3 423,130 - MPMX19_06233 0.38 -2.6 423,510 + MPMX19_06233 0.88 -1.9 423,510 + MPMX19_06233 0.88 -0.6 423,510 + MPMX19_06233 0.88 +0.2 423,510 + MPMX19_06233 0.88 -0.8 423,510 + MPMX19_06233 0.88 -1.4 423,511 - MPMX19_06233 0.88 -0.8 423,511 - MPMX19_06233 0.88 -1.9 423,620 + -0.4 423,620 + -0.9 423,621 - -1.6 423,793 + MPMX19_06234 0.13 +1.2 423,794 - MPMX19_06234 0.13 -0.2 423,835 + MPMX19_06234 0.17 -0.1 423,835 + MPMX19_06234 0.17 -1.1 423,835 + MPMX19_06234 0.17 -0.9 423,835 + MPMX19_06234 0.17 +0.3 423,835 + MPMX19_06234 0.17 -0.1 423,835 + MPMX19_06234 0.17 -0.3 423,835 + MPMX19_06234 0.17 -0.6 423,836 - MPMX19_06234 0.17 +0.2 423,836 - MPMX19_06234 0.17 +0.2 423,836 - MPMX19_06234 0.17 +1.0 423,836 - MPMX19_06234 0.17 +0.8 423,836 - MPMX19_06234 0.17 -0.7 423,836 - MPMX19_06234 0.17 -0.8 423,836 - MPMX19_06234 0.17 -0.6 423,892 + MPMX19_06234 0.21 +0.4 423,892 + MPMX19_06234 0.21 +0.3 423,892 + MPMX19_06234 0.21 -0.7 423,892 + MPMX19_06234 0.21 +1.0 423,893 - MPMX19_06234 0.21 -0.9 423,893 - MPMX19_06234 0.21 -1.9 423,893 - MPMX19_06234 0.21 -1.1 424,162 + MPMX19_06234 0.44 -1.0 424,162 + MPMX19_06234 0.44 -2.1 424,162 + MPMX19_06234 0.44 -0.6 424,162 + MPMX19_06234 0.44 -0.3 424,162 + MPMX19_06234 0.44 +0.2 424,162 + MPMX19_06234 0.44 +0.8 424,162 + MPMX19_06234 0.44 +0.3 424,162 + MPMX19_06234 0.44 -0.8 424,162 + MPMX19_06234 0.44 +0.8 424,162 + MPMX19_06234 0.44 -0.3 424,163 - MPMX19_06234 0.44 -0.2 424,163 - MPMX19_06234 0.44 -1.6 424,163 - MPMX19_06234 0.44 -0.5 424,163 - MPMX19_06234 0.44 +0.9 424,163 - MPMX19_06234 0.44 +0.8 424,163 - MPMX19_06234 0.44 -0.4 424,412 + MPMX19_06234 0.65 -0.4 424,412 + MPMX19_06234 0.65 -1.0 424,413 - MPMX19_06234 0.65 -0.1 424,413 - MPMX19_06234 0.65 -1.9 424,413 - MPMX19_06234 0.65 -0.1 424,413 - MPMX19_06234 0.65 +0.2 424,413 - MPMX19_06234 0.65 +0.8 424,413 - MPMX19_06234 0.65 -0.6 424,413 - MPMX19_06234 0.65 -0.4 424,413 - MPMX19_06234 0.65 -0.2 424,413 - MPMX19_06234 0.65 -2.2 424,413 - MPMX19_06234 0.65 +1.3 424,414 + MPMX19_06234 0.65 -1.2 424,414 + MPMX19_06234 0.65 -1.1 424,414 + MPMX19_06234 0.65 +1.6 424,414 + MPMX19_06234 0.65 +0.9 424,414 + MPMX19_06234 0.65 -1.5 424,414 + MPMX19_06234 0.65 -0.6 424,414 + MPMX19_06234 0.65 +0.9 424,414 + MPMX19_06234 0.65 -1.0 424,414 + MPMX19_06234 0.65 -1.1 424,414 + MPMX19_06234 0.65 -1.4 424,414 + MPMX19_06234 0.65 +0.5 424,414 + MPMX19_06234 0.65 +0.3 424,415 - MPMX19_06234 0.65 -0.1 424,415 - MPMX19_06234 0.65 -1.0 424,415 - MPMX19_06234 0.65 -0.5 424,415 - MPMX19_06234 0.65 -1.1 424,415 - MPMX19_06234 0.65 -1.7 424,415 - MPMX19_06234 0.65 +0.2 424,415 - MPMX19_06234 0.65 +0.7 424,415 - MPMX19_06234 0.65 -0.5 424,415 - MPMX19_06234 0.65 +0.5 424,415 - MPMX19_06234 0.65 +1.3 424,415 - MPMX19_06234 0.65 -1.3 424,415 - MPMX19_06234 0.65 -0.4 424,415 - MPMX19_06234 0.65 +0.6 424,415 - MPMX19_06234 0.65 -0.4 424,415 - MPMX19_06234 0.65 -1.2 424,415 - MPMX19_06234 0.65 -0.8 424,415 - MPMX19_06234 0.65 +1.1 424,415 - MPMX19_06234 0.65 -1.5 424,447 + MPMX19_06234 0.68 +0.2 424,447 + MPMX19_06234 0.68 -1.9 424,666 + MPMX19_06234 0.86 +1.0 424,696 + MPMX19_06234 0.89 -1.4 424,696 + MPMX19_06234 0.89 -0.1 424,696 + MPMX19_06234 0.89 +0.7 424,696 + MPMX19_06234 0.89 +0.3 424,697 - MPMX19_06234 0.89 -1.1 424,738 + -2.1 424,738 + -0.1 424,738 + +0.9 424,738 + -0.7 424,738 + -2.1 424,738 + +0.5 424,738 + +0.8 424,739 - -1.1 424,739 - -1.4 424,739 - -0.8 424,739 - -0.2 424,739 - -0.6 424,739 - -1.1 424,739 - +0.3 424,739 - -0.1 424,739 - -1.4 424,754 - +0.5 424,896 + -0.6 424,919 + -0.5 424,920 - +1.5 424,922 + -0.7 424,940 + +0.5 425,045 + +0.2 425,045 + -0.7 425,045 + -1.8 425,045 + -1.1 425,045 + -0.1 425,046 - -1.1 425,046 - +0.3 425,046 - -0.7 425,046 - -1.1 425,324 + MPMX19_06235 0.38 -1.7 425,325 - MPMX19_06235 0.38 -0.6 425,643 + MPMX19_06235 0.74 -0.6 425,643 + MPMX19_06235 0.74 +0.2 425,644 - MPMX19_06235 0.74 -0.4 425,644 - MPMX19_06235 0.74 +0.8 425,644 - MPMX19_06235 0.74 -0.5 425,787 - MPMX19_06235 0.90 -0.4 425,787 - MPMX19_06235 0.90 +0.3 425,787 - MPMX19_06235 0.90 +0.1
Or see this region's nucleotide sequence